PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961293.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 417aa MW: 47124 Da PI: 6.2514

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.6	1.8e-07	367	399	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + XP_024961293.1 367 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 399 59*****************************87 PP
2	ELK	28.8	2.7e-10	320	341	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_024961293.1 320 ELKHELKQGYKEKIVDIREEIL 341 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MAFHDNISHE MALQHYADQH QLTESVEVLR GILPSDHHHH IAHSSSSPDA GPKTSQSPPP 60 TWLNSAILRQ QNHHYAGDGS GGSFLHLQTT NSDSSNSNNH WLSPRPIDND DSNRESMFVS 120 AINSDNNIDD NAMKVSQRQS ESDGNGGNHE RDWEFAKCKA DILSHPMYDQ LLSAHVSCLR 180 IATPVDQLPR IDAQLAQSQQ VISKYSVFGN HNQPLDDKDL NQFMAHYVVL LSSFKEQLQQ 240 HVRVHAMEAV MACWELEQSL QSLTGVAPGE GTGATMSDDD EEQVDSDTNL FDGGLDVSDS 300 MGFGLPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSLLKAW 360 WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTA VKSKRKR

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MAFHDNISHE MALQHYADQH QLTESVEVLR GILPSDHHHH IAHSSSSPDA GPKTSQSPPP  60
TWLNSAILRQ QNHHYAGDGS GGSFLHLQTT NSDSSNSNNH WLSPRPIDND DSNRESMFVS  120
AINSDNNIDD NAMKVSQRQS ESDGNGGNHE RDWEFAKCKA DILSHPMYDQ LLSAHVSCLR  180
IATPVDQLPR IDAQLAQSQQ VISKYSVFGN HNQPLDDKDL NQFMAHYVVL LSSFKEQLQQ  240
HVRVHAMEAV MACWELEQSL QSLTGVAPGE GTGATMSDDD EEQVDSDTNL FDGGLDVSDS  300
MGFGLPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSLLKAW  360
WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTA VKSKRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	397	417	RKRNWHSNPSSSTAVKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	1e-168	TALE family protein