PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961175.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 354aa MW: 40513 Da PI: 5.4939

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	7.9e-35	16	108	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k ye+++d++++ lisws +++sf+v++e ef++++LpkyFkh+n++SF RQLn+YgF+k+++++ weF+++ F kg+k+ll++ XP_024961175.1 16 FLLKCYEMVDDPTTDALISWSPTNDSFIVWNEXEFTSELLPKYFKHNNYSSFQRQLNIYGFRKTDTDR---------WEFANDGFVKGQKHLLNS 101 9******************999************************************9999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+rkk + XP_024961175.1 102 INRKKVT 108 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MVKKSTEIGG LSIAPFLLKC YEMVDDPTTD ALISWSPTND SFIVWNEXEF TSELLPKYFK 60 HNNYSSFQRQ LNIYGFRKTD TDRWEFANDG FVKGQKHLLN SINRKKVTQV TAQQKVTQQK 120 APELAKLIDV SKHEEKLWKE VESLKTDKNM LMQELIKQRE HQETSQTKML VLREQLKGME 180 KNQHQMLSFI VMAMQSPGFF SQLSPPVQRT WLKSERSSKT ILKPVTKDSK RVVHPQEGAI 240 VKYQPPIETP AIILEDPVEL DLTCEDLFMD FMPGSTLDDG INSPENLVPF IFHDLPDSEN 300 MLDQLLSSPV NKTSKDLIDD GRGTQEIGPD GFQFLTEGFG RSLTVSTKEG NFIV

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MVKKSTEIGG LSIAPFLLKC YEMVDDPTTD ALISWSPTND SFIVWNEXEF TSELLPKYFK  60
HNNYSSFQRQ LNIYGFRKTD TDRWEFANDG FVKGQKHLLN SINRKKVTQV TAQQKVTQQK  120
APELAKLIDV SKHEEKLWKE VESLKTDKNM LMQELIKQRE HQETSQTKML VLREQLKGME  180
KNQHQMLSFI VMAMQSPGFF SQLSPPVQRT WLKSERSSKT ILKPVTKDSK RVVHPQEGAI  240
VKYQPPIETP AIILEDPVEL DLTCEDLFMD FMPGSTLDDG INSPENLVPF IFHDLPDSEN  300
MLDQLLSSPV NKTSKDLIDD GRGTQEIGPD GFQFLTEGFG RSLTVSTKEG NFIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	2e-70	HSF family protein