PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024961113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 376aa MW: 41913.2 Da PI: 10.1003 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.1 | 6.3e-15 | 94 | 185 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikeg.ekkrtsessstcpyfdqle 86 +W+++ + +Liea ++ +l+rg+l++++W+ev++ + + ++ +r+ +qCk++++ l+k+yk +k + ++++ +s +p+f l+ XP_024961113.1 94 CWSEEATFTLIEAWGDRYVELNRGNLRQKHWQEVADSVnarhgHTKKARRTDIQCKNRIDTLKKKYKVEKSKvLELGADNYVSPWPFFAPLD 185 7*************************************988888888899*****************9886515666899999*****9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence |
MSCQSDYNPP SNSHPPHAPP LKPHLSPSSA VSPPTATTHR SSDGNSTTSH QSETAATASM 60 DDNGVAPPLE LRRPPPPPPP HPPRNTSFPV REDCWSEEAT FTLIEAWGDR YVELNRGNLR 120 QKHWQEVADS VNARHGHTKK ARRTDIQCKN RIDTLKKKYK VEKSKVLELG ADNYVSPWPF 180 FAPLDSLIGS SFKPSTQTPT PPPQRKRIST PPSLPALPPP PSSVPVGPRS KRPAPPAYQP 240 STDSSFFRRN FSVMAAAAAA IDGAEDSDTS WSSGGNGPRR LRMQKADNTG GDPYHQLAEA 300 IARFAEVYQR VEEAKQKQMV ELEKHRLQFT KDLELQRMKL LMESQLQLVK MKRSKRNPEP 360 AFTEYRGLGS LELKNW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 3e-37 | Trihelix family protein |