PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961112.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 376aa MW: 41769.8 Da PI: 9.6446

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.1	6.3e-15	94	185	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikeg.ekkrtsessstcpyfdqle 86 +W+++ + +Liea ++ +l+rg+l++++W+ev++ + + ++ +r+ +qCk++++ l+k+yk +k + ++++ +s +p+f l+ XP_024961112.1 94 CWSEEATFTLIEAWGDRYVELNRGNLRQKHWQEVADSVnarhgHTKKARRTDIQCKNRIDTLKKKYKVEKSKvLELGADNYVSPWPFFAPLD 185 7***********************************988888888899*************9886515666899999***9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MSCQSDYNPP SNSHPPHAPP LKPHLSPSSA VSPPTATTHR SSDGNSTTSH QSETAATASM 60 DDNGVAPPLE LRRPPPPPPP HPPRNTSFPV REDCWSEEAT FTLIEAWGDR YVELNRGNLR 120 QKHWQEVADS VNARHGHTKK ARRTDIQCKN RIDTLKKKYK VEKSKVLELG ADNYVSPWPF 180 FAPLDSLIGS SFKPSTQTPT PPPQRKRIST PPSLPALPPP PSSVPVGPRS KRPAPPAYQP 240 STDSSFFRRN FSVMAAAAAA IDGAEDSDTS WSSGGNGPRR LRMQKADNTG GDPYHQLAEA 300 IARFAEVYQR VEEAKQKQMV ELEKHRLQFT KDLELQRMKL LMESQLQLVK MKRSKRNPEP 360 DFCRSDDEGD HSASIS

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MSCQSDYNPP SNSHPPHAPP LKPHLSPSSA VSPPTATTHR SSDGNSTTSH QSETAATASM  60
DDNGVAPPLE LRRPPPPPPP HPPRNTSFPV REDCWSEEAT FTLIEAWGDR YVELNRGNLR  120
QKHWQEVADS VNARHGHTKK ARRTDIQCKN RIDTLKKKYK VEKSKVLELG ADNYVSPWPF  180
FAPLDSLIGS SFKPSTQTPT PPPQRKRIST PPSLPALPPP PSSVPVGPRS KRPAPPAYQP  240
STDSSFFRRN FSVMAAAAAA IDGAEDSDTS WSSGGNGPRR LRMQKADNTG GDPYHQLAEA  300
IARFAEVYQR VEEAKQKQMV ELEKHRLQFT KDLELQRMKL LMESQLQLVK MKRSKRNPEP  360
DFCRSDDEGD HSASIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-37	Trihelix family protein