PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961086.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 769aa MW: 88972.3 Da PI: 8.7824

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71	2.8e-22	167	261	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +Y++YA ++GF+vr++ +k++ +ng i +r+fvCs+eg++++++ + e++ r+++ +r+gC+a++k++++k ++ +e++++++ HnHel XP_024961086.1 167 MYRAYADNAGFDVRMHVKKTN-KNGXIQTRWFVCSREGNPKKKDFDsxxmqpGERRYRNTNIKRCGCNACIKIHLTKdRSCYEIYEFVESHNHEL 260 8***********9887766.8889************999999999888889999************9999************9 PP FAR1 90 a 90 + XP_024961086.1 261 F 261 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MENPIVKEFQ NKKSDKLNSR YEYGRKPITD DEEDGQSVLI GPDDITTSQH EALGSHGSHP 60 GKKLYEQATM NTRFVKPSIN SVVIRISLLK STFGNKNFIH EDKLNDYQQP DYFFPSDLDS 120 ITSSQQEVDY DIGESSEGIK FFIPKVDDAL KPNMKAQYAT INEVERMYRA YADNAGFDVR 180 MHVKKTNKNG XIQTRWFVCS REGNPKKKDF DSXXMQPGER RYRNTNIKRC GCNACIKIHL 240 TKDRSCYEIY EFVESHNHEL FNHNDRRFSR KNRQMKYTDF KTVLNSSSYK VGARRAHRIQ 300 TALNXGFEHT RISEIDFKNF KRDAVACXAN KDATMHAMIF VPFMAVDNHK ASVVVGSALI 360 SGETIDNFXW VLEAFLKCHA KQPVFVITDQ CSAMKQAIPK VFTESKHRLC MWNIMKKVPS 420 KVSVALNHDP MFNKVINKLV WNIHIGPSEF ESRWNEMIDK YNLAGDTWFT EMYEIRHSWI 480 PAYYKDTSMS GLMKTTSRSE SSNSYINIYE SYWFDLVQFL NNYDVAIEKQ RYRQFVHETV 540 TRTTNLKFLT PLRLESHASS IYSRNVFFDI QKEIKKAVWF CAIATVECRD DFKSFLISHK 600 AKKSADNIKY LVGRNYSTNT VECDCNLFTR NGYLCHHAFK VNAEKEKSII DLYSKMDDII 660 SISRNDQSIL DRLGXNLDKF MVDIEKEVPY EDPSQQKLDA IRDHLGVSIP DEADILPPSG 720 IRNKGCGTGK RLVSVSEKLQ NNCKKTKRKC ATCGQRSGHD SRNCPELIY

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MENPIVKEFQ NKKSDKLNSR YEYGRKPITD DEEDGQSVLI GPDDITTSQH EALGSHGSHP  60
GKKLYEQATM NTRFVKPSIN SVVIRISLLK STFGNKNFIH EDKLNDYQQP DYFFPSDLDS  120
ITSSQQEVDY DIGESSEGIK FFIPKVDDAL KPNMKAQYAT INEVERMYRA YADNAGFDVR  180
MHVKKTNKNG XIQTRWFVCS REGNPKKKDF DSXXMQPGER RYRNTNIKRC GCNACIKIHL  240
TKDRSCYEIY EFVESHNHEL FNHNDRRFSR KNRQMKYTDF KTVLNSSSYK VGARRAHRIQ  300
TALNXGFEHT RISEIDFKNF KRDAVACXAN KDATMHAMIF VPFMAVDNHK ASVVVGSALI  360
SGETIDNFXW VLEAFLKCHA KQPVFVITDQ CSAMKQAIPK VFTESKHRLC MWNIMKKVPS  420
KVSVALNHDP MFNKVINKLV WNIHIGPSEF ESRWNEMIDK YNLAGDTWFT EMYEIRHSWI  480
PAYYKDTSMS GLMKTTSRSE SSNSYINIYE SYWFDLVQFL NNYDVAIEKQ RYRQFVHETV  540
TRTTNLKFLT PLRLESHASS IYSRNVFFDI QKEIKKAVWF CAIATVECRD DFKSFLISHK  600
AKKSADNIKY LVGRNYSTNT VECDCNLFTR NGYLCHHAFK VNAEKEKSII DLYSKMDDII  660
SISRNDQSIL DRLGXNLDKF MVDIEKEVPY EDPSQQKLDA IRDHLGVSIP DEADILPPSG  720
IRNKGCGTGK RLVSVSEKLQ NNCKKTKRKC ATCGQRSGHD SRNCPELIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-35	FAR1 family protein