PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961039.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 415aa MW: 42838.7 Da PI: 6.8826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	217	262	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_024961039.1 217 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 262 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MSLQDLQNGN SFDPTSSHDD FLEQMLCGLQ SGVSWPDISA GNAGGGGAAH QKPGLPWDVD 60 QFDDQSAFLA SKLRQHQISA GTGGAGNPSS AAKSLLLQQQ LLLSRGLTSA GDSGLFQKDI 120 VDASSFKSPV TSSPVIQQND SIRTLFNGFA GSLQSNQTQE FHYPPAQSFG SPGAAAALIN 180 QGQTTGGATA AGGGGNGPPA QPRQRVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP 240 NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADISSQG GREGGGNGAA 300 GRSSNGTASS SNNDTMTVAE NQVVKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH 360 PSSTRNNHPM LLGGGDGGGG PSSPNMSVLT VQSANGVLPP EGVSIIRNST SVSKP

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MSLQDLQNGN SFDPTSSHDD FLEQMLCGLQ SGVSWPDISA GNAGGGGAAH QKPGLPWDVD  60
QFDDQSAFLA SKLRQHQISA GTGGAGNPSS AAKSLLLQQQ LLLSRGLTSA GDSGLFQKDI  120
VDASSFKSPV TSSPVIQQND SIRTLFNGFA GSLQSNQTQE FHYPPAQSFG SPGAAAALIN  180
QGQTTGGATA AGGGGNGPPA QPRQRVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP  240
NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADISSQG GREGGGNGAA  300
GRSSNGTASS SNNDTMTVAE NQVVKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH  360
PSSTRNNHPM LLGGGDGGGG PSSPNMSVLT VQSANGVLPP EGVSIIRNST SVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	RLRRER
2	290	296	GGREGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-52	bHLH family protein