PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960952.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 385aa MW: 43017.6 Da PI: 8.372

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+W p+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_024960952.1 47 KPRLKWMPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 101 79****************************************************8 PP
2	Myb_DNA-binding	56.7	5.3e-18	49	100	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++W ++++e++++av+qlGg t+k++ + mg +g+tl+++ks++qky+ XP_024960952.1 49 RLKWMPDLHERFIEAVNQLGGAdkaTPKSVLKLMGiQGLTLYHLKSHLQKYR 100 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MQMYHHHHQG KNIHSSSRMS ITPERHLFLQ GGNGGGDSGL VLSTDAKPRL KWMPDLHERF 60 IEAVNQLGGA DKATPKSVLK LMGIQGLTLY HLKSHLQKYR LSKNLYRQTN SGGANKVDMV 120 APTEDAMGER NGIPPSNSSV CPQTNKNLQI SEAIQMQIEV QRRLHEQLEV QRHLQLRIEA 180 QGKYLQAVLE KAQETLGRQN LGTVGLEAAK VQLSELVSKV SNHCLNSAFS GMKDASTQTN 240 QPTDCSIDSC LTYCEGQQTE QEIIGLTLLK SKKVDNDPEK VWCEETKRNK KFLSASDLSM 300 SVGGLKGSEW NTSRSYNEER FTDRGEVILM NQITQSKTDS VKPEKVEMPQ KFQLPNFGQK 360 LDLNSHDGSD AASSRKQFDL NGLSW

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MQMYHHHHQG KNIHSSSRMS ITPERHLFLQ GGNGGGDSGL VLSTDAKPRL KWMPDLHERF  60
IEAVNQLGGA DKATPKSVLK LMGIQGLTLY HLKSHLQKYR LSKNLYRQTN SGGANKVDMV  120
APTEDAMGER NGIPPSNSSV CPQTNKNLQI SEAIQMQIEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQAVLE KAQETLGRQN LGTVGLEAAK VQLSELVSKV SNHCLNSAFS GMKDASTQTN  240
QPTDCSIDSC LTYCEGQQTE QEIIGLTLLK SKKVDNDPEK VWCEETKRNK KFLSASDLSM  300
SVGGLKGSEW NTSRSYNEER FTDRGEVILM NQITQSKTDS VKPEKVEMPQ KFQLPNFGQK  360
LDLNSHDGSD AASSRKQFDL NGLSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-112	G2-like family protein