PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960951.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 412aa MW: 46096.9 Da PI: 8.3747

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.3	8.5e-29	47	98	1	52
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 kprl+W p+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQ XP_024960951.1 47 KPRLKWMPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQV 98 79*************************************************6 PP
2	Myb_DNA-binding	51.2	2.8e-16	49	98	1	46
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqk 46 r++W ++++e++++av+qlGg t+k++ + mg +g+tl+++ks++q XP_024960951.1 49 RLKWMPDLHERFIEAVNQLGGAdkaTPKSVLKLMGiQGLTLYHLKSHLQV 98 89****************99************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MQMYHHHHQG KNIHSSSRMS ITPERHLFLQ GGNGGGDSGL VLSTDAKPRL KWMPDLHERF 60 IEAVNQLGGA DKATPKSVLK LMGIQGLTLY HLKSHLQVQQ THANQSSFSM TETGRQTNLL 120 FGWQKYRLSK NLYRQTNSGG ANKVDMVAPT EDAMGERNGI PPSNSSVCPQ TNKNLQISEA 180 IQMQIEVQRR LHEQLEVQRH LQLRIEAQGK YLQAVLEKAQ ETLGRQNLGT VGLEAAKVQL 240 SELVSKVSNH CLNSAFSGMK DASTQTNQPT DCSIDSCLTY CEGQQTEQEI IGLTLLKSKK 300 VDNDPEKVWC EETKRNKKFL SASDLSMSVG GLKGSEWNTS RSYNEERFTD RGEVILMNQI 360 TQSKTDSVKP EKVEMPQKFQ LPNFGQKLDL NSHDGSDAAS SRKQFDLNGL SW

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MQMYHHHHQG KNIHSSSRMS ITPERHLFLQ GGNGGGDSGL VLSTDAKPRL KWMPDLHERF  60
IEAVNQLGGA DKATPKSVLK LMGIQGLTLY HLKSHLQVQQ THANQSSFSM TETGRQTNLL  120
FGWQKYRLSK NLYRQTNSGG ANKVDMVAPT EDAMGERNGI PPSNSSVCPQ TNKNLQISEA  180
IQMQIEVQRR LHEQLEVQRH LQLRIEAQGK YLQAVLEKAQ ETLGRQNLGT VGLEAAKVQL  240
SELVSKVSNH CLNSAFSGMK DASTQTNQPT DCSIDSCLTY CEGQQTEQEI IGLTLLKSKK  300
VDNDPEKVWC EETKRNKKFL SASDLSMSVG GLKGSEWNTS RSYNEERFTD RGEVILMNQI  360
TQSKTDSVKP EKVEMPQKFQ LPNFGQKLDL NSHDGSDAAS SRKQFDLNGL SW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-106	G2-like family protein