PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960847.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 493aa MW: 54687.1 Da PI: 5.6998

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l ++vk++G g+W+++ r g+ R++k+c++rw ++l XP_024960847.1 24 KGPWTAGEDAVLMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 71 79******************************************9986 PP
2	Myb_DNA-binding	49.6	9e-16	77	120	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++ ++G++ W++ a +++ gRt++++k++w++ XP_024960847.1 77 KGAFTPEEERQIIELHSKFGNK-WARMALHLQ-GRTDNEIKNYWNT 120 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MPPEDGATSA GRNTVGGGGA ILKKGPWTAG EDAVLMEYVK KHGEGNWNAV QRNSGLMRCG 60 KSCRLRWANH LRPNLKKGAF TPEEERQIIE LHSKFGNKWA RMALHLQGRT DNEIKNYWNT 120 RLKRRLRAGL PIYPVDFQQH HHHHRRHHEP SLQNQTLPFS SSSSSSNHAN TALNSISPML 180 FDPINYGPVF NTPLYLPNSQ SHFKILRDTN GGVSALSLPS HSNAQFATSS RSSMPFFNQG 240 FPTANHGMSQ IPTTEASFND VRLFETVENE LPSIQSSFQA ITPTCSSNTV NDHMIVPSND 300 GDNAISPYIS PPGNSGLLED VLGESRALLS SSQILSNESM SPEADKGKEK FTHEYSLMEE 360 PENVTLESVF EPRENKPTLE DSSSGHSSIE IGVKPRSDVF EEINAMDDDF SSWLDFPTGS 420 LQDWYGGSED ASTKKPVDAS NRNMVGADNQ VEISCSPVAT TETDHDHDHD HDHDQEHDWT 480 MGSCCWNNMP GFS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MPPEDGATSA GRNTVGGGGA ILKKGPWTAG EDAVLMEYVK KHGEGNWNAV QRNSGLMRCG  60
KSCRLRWANH LRPNLKKGAF TPEEERQIIE LHSKFGNKWA RMALHLQGRT DNEIKNYWNT  120
RLKRRLRAGL PIYPVDFQQH HHHHRRHHEP SLQNQTLPFS SSSSSSNHAN TALNSISPML  180
FDPINYGPVF NTPLYLPNSQ SHFKILRDTN GGVSALSLPS HSNAQFATSS RSSMPFFNQG  240
FPTANHGMSQ IPTTEASFND VRLFETVENE LPSIQSSFQA ITPTCSSNTV NDHMIVPSND  300
GDNAISPYIS PPGNSGLLED VLGESRALLS SSQILSNESM SPEADKGKEK FTHEYSLMEE  360
PENVTLESVF EPRENKPTLE DSSSGHSSIE IGVKPRSDVF EEINAMDDDF SSWLDFPTGS  420
LQDWYGGSED ASTKKPVDAS NRNMVGADNQ VEISCSPVAT TETDHDHDHD HDHDQEHDWT  480
MGSCCWNNMP GFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	RLKRRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	6e-67	MYB family protein