PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960843.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 195aa MW: 21913.6 Da PI: 6.3574

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.9	1.8e-07	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ +++ e+q +C+ ++ lC C H+ XP_024960843.1 4 QCDVCHKAEAQVYCTADEASLCSACDHRVHHA 35 7**************************99743 PP
2	zf-B_box	28.6	2.8e-09	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ lfC++++ lC++C +Hk Ht XP_024960843.1 55 SPRCDICQERRAFLFCKEDRAILCRECDIPIHKAneHT 92 689*****************************878854 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MKIQCDVCHK AEAQVYCTAD EASLCSACDH RVHHANKLAN RHPRFSLLHP SLKDSPRCDI 60 CQERRAFLFC KEDRAILCRE CDIPIHKANE HTQKHTRFLL TGVKLSASLS CYDDLSHQTP 120 SSSNSNCSIE IESTKGSGVS IDQKSVSITN HSDYSVSFSQ EEGASMEARS ISEYLMETLP 180 GWHVDEFLDP YGFCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	8e-66	DBB family protein