PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024960785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 345aa MW: 40242 Da PI: 4.4791 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 37.5 | 6.3e-12 | 118 | 209 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekk......rtsessstcpyfdql 85 +W+++ + +L+e+ ++ +l+r++l+ +W ev++k++e ++e++ +qC++++e l+k+ykk+k+ +++ + ++ + ++++f+++ XP_024960785.1 118 EWSENATYVLLEVWGDRYLQLGRKSLRVDDWVEVAEKVSEMcKMEINETQCRNRLETLKKKYKKEKAKMEDmgmggrGGEGYHGKWAFFKKM 209 5*************************************775378**********************97654111111234445567777666 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence |
MDYNPSVRSR RPVRNNNNYH GNSTYNEYEN DEFDEDNEGI NQRYGYQEDE EEEDDEDEYQ 60 HGYYRVSGGG IDTGESSRRH QKKRRLDNLV SNYEFAPRAS VNASKEVYGG VPDRSGDEWS 120 ENATYVLLEV WGDRYLQLGR KSLRVDDWVE VAEKVSEMCK MEINETQCRN RLETLKKKYK 180 KEKAKMEDMG MGGRGGEGYH GKWAFFKKMD MLLSPKKQHN GLPCGVDSGE YVFMNTKVYL 240 NQSNALDEMR DSPGESESDE DDSDDRNDDD GFRLLAESVQ NFGEIYEKIE GRKRQQMLEL 300 EKMRMDFQRE LELQKKQILE RAQAEIAKIR EGDDEDINSV ENLSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 4e-67 | Trihelix family protein |