PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960784.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 345aa MW: 40242 Da PI: 4.4791

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.5	6.3e-12	118	209	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekk......rtsessstcpyfdql 85 +W+++ + +L+e+ ++ +l+r++l+ +W ev++k++e ++e++ +qC++++e l+k+ykk+k+ +++ + ++ + ++++f+++ XP_024960784.1 118 EWSENATYVLLEVWGDRYLQLGRKSLRVDDWVEVAEKVSEMcKMEINETQCRNRLETLKKKYKKEKAKMEDmgmggrGGEGYHGKWAFFKKM 209 5***********************************775378********************97654111111234445567777666 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MDYNPSVRSR RPVRNNNNYH GNSTYNEYEN DEFDEDNEGI NQRYGYQEDE EEEDDEDEYQ 60 HGYYRVSGGG IDTGESSRRH QKKRRLDNLV SNYEFAPRAS VNASKEVYGG VPDRSGDEWS 120 ENATYVLLEV WGDRYLQLGR KSLRVDDWVE VAEKVSEMCK MEINETQCRN RLETLKKKYK 180 KEKAKMEDMG MGGRGGEGYH GKWAFFKKMD MLLSPKKQHN GLPCGVDSGE YVFMNTKVYL 240 NQSNALDEMR DSPGESESDE DDSDDRNDDD GFRLLAESVQ NFGEIYEKIE GRKRQQMLEL 300 EKMRMDFQRE LELQKKQILE RAQAEIAKIR EGDDEDINSV ENLSG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MDYNPSVRSR RPVRNNNNYH GNSTYNEYEN DEFDEDNEGI NQRYGYQEDE EEEDDEDEYQ  60
HGYYRVSGGG IDTGESSRRH QKKRRLDNLV SNYEFAPRAS VNASKEVYGG VPDRSGDEWS  120
ENATYVLLEV WGDRYLQLGR KSLRVDDWVE VAEKVSEMCK MEINETQCRN RLETLKKKYK  180
KEKAKMEDMG MGGRGGEGYH GKWAFFKKMD MLLSPKKQHN GLPCGVDSGE YVFMNTKVYL  240
NQSNALDEMR DSPGESESDE DDSDDRNDDD GFRLLAESVQ NFGEIYEKIE GRKRQQMLEL  300
EKMRMDFQRE LELQKKQILE RAQAEIAKIR EGDDEDINSV ENLSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-67	Trihelix family protein