PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960776.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 480aa MW: 52589 Da PI: 6.9842

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.4e-32	255	310	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_024960776.1 255 KTRRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 310 68****************************************************97 PP
2	Myb_DNA-binding	40.3	7.3e-13	257	308	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+++++ ++v+a ++lGg t+k I + m g+t ++ks++qky+ XP_024960776.1 257 RRCWSPDLHRRFVNALQMLGGSqvaTPKQIRELMKvDGLTNDEVKSHLQKYR 308 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MMASASELSL ECKPHSYSML LKTIGDQQLS NTHDQTQKIE EFLSRLEEER LKIDAFKREL 60 PLCMQLLTNA METSRQQLQT YRANQGSPVL EEFIPLKNSN PEGPEKMALS SVSDNKANWM 120 TSAQLWSQAS STTTTTTNAT ATAGTTTDTK ITQNSTVFTT TANETDISFN ANKQRNNGAF 180 LPFSKERNPS CPTPALTLPD LALASGDKDD HEDNKSCLRE NSSIKGGNGD ISDNQTITTT 240 TTAAGATTSS QTHRKTRRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM KVDGLTNDEV 300 KSHLQKYRLH TRRPSPSPQS AGNAAPQLVV LGGIWVPPEY ATAAGAQTLY TTHPNATTTN 360 THYCTQQLPQ DFYPTPVLPP PQPPHHHHHH HNTTTTTNLH HQLHHMYKPS SHTTQSQPDS 420 NGRGGTTTTT TGGGNRSESI EDGKSESGGS WKADSGGETK ALILRDECEE SNGSEITLKF

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MMASASELSL ECKPHSYSML LKTIGDQQLS NTHDQTQKIE EFLSRLEEER LKIDAFKREL  60
PLCMQLLTNA METSRQQLQT YRANQGSPVL EEFIPLKNSN PEGPEKMALS SVSDNKANWM  120
TSAQLWSQAS STTTTTTNAT ATAGTTTDTK ITQNSTVFTT TANETDISFN ANKQRNNGAF  180
LPFSKERNPS CPTPALTLPD LALASGDKDD HEDNKSCLRE NSSIKGGNGD ISDNQTITTT  240
TTAAGATTSS QTHRKTRRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM KVDGLTNDEV  300
KSHLQKYRLH TRRPSPSPQS AGNAAPQLVV LGGIWVPPEY ATAAGAQTLY TTHPNATTTN  360
THYCTQQLPQ DFYPTPVLPP PQPPHHHHHH HNTTTTTNLH HQLHHMYKPS SHTTQSQPDS  420
NGRGGTTTTT TGGGNRSESI EDGKSESGGS WKADSGGETK ALILRDECEE SNGSEITLKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	7e-89	G2-like family protein