PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024960758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 440aa MW: 48362.1 Da PI: 6.422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.3e-05 | 335 | 369 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A+eYIk L XP_024960758.1 335 KMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 369 6778999999999998.....8****************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence |
MADNWWDSSS RTRPCLDSVS VTSSIDLFQD THDHTTTAAA TTTATATATT SLHMMGLGLS 60 SQSLPQSLDW NQALLRGDQK SNQSGYRNLL QDQDNNLSSN TNTFQLENNQ WRSQKMYSAN 120 SQDSASDFKQ INVVRGFQLD QPMHDSDNES IITCQGLNSS FQSMDLYGSP ASTIMQSLFG 180 SDNNNQQQDS GFDQNQGMSY SLYQSSYGSM NMPGGGGGGX GSCRLNWSKF PPQPQEFAIN 240 AHPKVQLPIA DIGGNQLHFS NNARFWNASG GGVNDIRSGF FPSLQMQLPS SSFEDKPKMT 300 SKTVKESSSE SSSNKRPRTE TQSPLAAFSK VKKEKMGDRI TALQQLVSPF GKTDTASVLS 360 EAIEYIKFLH EQVSVLSTPY MKNGASIMQH QQTVDKSVIG PIRQDLRSRG LCLVPVSSTF 420 PVTHETTVDF WTPTFGGTFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 6e-66 | bHLH family protein |