PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024960734.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 21005.4 Da PI: 9.6543 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.7e-11 | 2 | 50 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N+ + Lr++ P + k+ + a+i ++e+Ik++q XP_024960734.1 2 SHIAVERNRRRQMNEHLKVLRSMTPCF---YIKRGDQASIIGGVIEFIKEMQ 50 89************************9...9*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MSHIAVERNR RRQMNEHLKV LRSMTPCFYI KRGDQASIIG GVIEFIKEMQ QVLQSLESKK 60 RRRSISPSPG PSPKPILQPS TPQSERSTIV HENIKELGAS CNSPVADVEA KISGSNVVLR 120 TVSRRIPGQV VKIINMLENL SLEILHLNIS SMEDTVLYSF VIKIGLECQL SVEELAVEVQ 180 KSFSANLT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 5e-82 | bHLH family protein |