PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960531.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 301aa MW: 32748.9 Da PI: 5.3232

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl XP_024960531.1 4 QCNVCEAAEATVLCCADEAALCWTCDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	27.9	4.7e-09	53	86	2	35
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 +++kC+ ++e +fC +++ l+C++C +++H XP_024960531.1 53 QMPKCDICQEAVGYFFCLEDRALFCRKCDVAIHT 86 799******9******************93 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MKIQCNVCEA AEATVLCCAD EAALCWTCDE KVHAANKLAS KHQRVPLSTS NTQMPKCDIC 60 QEAVGYFFCL EDRALFCRKC DVAIHTVNSL VSSHQRFLLT GVKVGLEAAD PGVSSSTGKS 120 HSCDKIPEAE KLQSLQGRSV PMSATSQFNK VMPVQAAGTV DFLFPKMPFA GGSSAESIQQ 180 WQFDDFLGLS DFSQSYNYID NGSSKADSGK FGESDGSPIL RDMEVELDGE DCLGQVPDSS 240 WAVPQISSPP TASGLCWPKD LPHHQHQIDS AAFVPDVCYL PVPNFYGSQQ NTGTLKRRRH 300 L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	3e-98	DBB family protein