PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960526.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 332aa    MW: 37539.3 Da    PI: 5.3477
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d++l++li+w +++nsf+v+d+ +f++++Lp yFkh+nf+SF+RQLn+YgF+kv+ ++         weF++++F +g+ +ll++
  XP_024960526.1  10 FVMKTYQMVNDSSLDNLIRWGTSNNSFIVVDSLDFSQRLLPAYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEWFLRGQVHLLKN 95 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+rk++
  XP_024960526.1  96 IERKRQ 101
                     ***987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MESNEVIAPF VMKTYQMVND SSLDNLIRWG TSNNSFIVVD SLDFSQRLLP AYFKHNNFSS  60
FIRQLNTYGF RKVDPDRWEF ANEWFLRGQV HLLKNIERKR QVNSSRGKYT ANSRGDDEGE  120
EEMVMEIARL KQEQKALEEE LIGMNKRLEA TERRPEQMMA LLCKVAEDPE ILPRMMLEKV  180
QRSKRLVDKK RQRRLITPPP PFPSSSSSSF EISNSIKREE DECYQMAKGS IVLSPEGYCS  240
NEPLWRSSPS PVTPSTTVWP WNKDTCGRLG VDDDGGGFSM ELEPINGINR YAYNTGGGGG  300
GGGNTLFFGD GSGDPDVRPP PPYPFSLLGG GL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188195DKKRQRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-72HSF family protein