PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960369.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 309aa    MW: 35158.8 Da    PI: 7.4755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +l+d+++ +G+g +W + + ++g +R++k+c++rw++yl
   XP_024960369.1 14 KGPWDPEEDAKLKDYIENHGTGgNWIALPGKIGIKRCGKSCRLRWLNYL 62
                     79*******************************55************97 PP
2Myb_DNA-binding33.41.1e-1069111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++ +k++w++
   XP_024960369.1  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNGIKNYWNT 111
                      569******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGKAPCCDKA SVKKGPWDPE EDAKLKDYIE NHGTGGNWIA LPGKIGIKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNGIKNYWN TRLKKKLLRR  120
CKQAQPNWLS VPCTNLKEES SIETPSNSAI DDRLHLHMQL QSLENPNIFK ANMETWPCKL  180
PPIQEKMMRN LQLLNESSNS LMMQHVSHNT PQNAELYGTS NNSLQQEYSP STMMVNGMDN  240
SINGIDIPGS STHASELGDT EQRRMELQQF WAFQAGIDEF LNDNGANLVS MNQAHMREFD  300
YFKVHGWCQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-78MYB family protein