PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960337.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CPP

Protein Properties

Length: 609aa MW: 66016.1 Da PI: 7.5575

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.4	1.6e-14	136	174	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e XP_024960337.1 136 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCHNNIE 174 89************************.******976 PP
2	TCR	50.9	3.2e-16	220	259	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_024960337.1 220 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 259 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MEKSEGGGDL NFPPKTNQSE VAEATTDFPA AKKLARQLDF NIVGGGSQPA AVTPVVLPEH 60 PQRPVVVQIH QPPPPAPPSP IQSPPQQQPP PPPLIPAMQH SHGAIVHQQN LRPVKPESPK 120 SRPRPNAEVK DGTPKKQKQC NCKHSRCLKL YCECFASGIY CDGCNCVNCH NNIENEPARR 180 DAVESTLERN PNAFRPKIAS SPHGNRDNRE EAGEVVVLGK HNKGCHCKKS GCLKKYCECF 240 QANILCSENC KCMDCKNFEG SEERQALFHG DSANNIAYLQ QAANAAITGA IGSSGYGSPP 300 VSRKRKVQEL FFGGPAAKDT SFHRIAQFQQ TNHVKVSAPS SSWPSVPGAR VANNASVGPS 360 KFMYRSLLAD LIRPDDMKEL CAVLVAYTSE AARVLSDERN VKEKMTNNGE STLTSSSIDR 420 LQSPKEPNAQ KAVADESLSG IQAENPGLDE SGSDGSRGRP MSPGTLALMC DEQDTVFINS 480 GSNLLVNNHG SATYGHLPNG QVITESYAEQ EKMVLTAFRD CLNKLITLGE LKETQCSSLA 540 RSDSGGQSQM EAVENPTTKA RWDPFVNGFP RSAALPTTNP SQNNDNYTHL KIPFHAENGD 600 LKLKPEKDV

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MEKSEGGGDL NFPPKTNQSE VAEATTDFPA AKKLARQLDF NIVGGGSQPA AVTPVVLPEH  60
PQRPVVVQIH QPPPPAPPSP IQSPPQQQPP PPPLIPAMQH SHGAIVHQQN LRPVKPESPK  120
SRPRPNAEVK DGTPKKQKQC NCKHSRCLKL YCECFASGIY CDGCNCVNCH NNIENEPARR  180
DAVESTLERN PNAFRPKIAS SPHGNRDNRE EAGEVVVLGK HNKGCHCKKS GCLKKYCECF  240
QANILCSENC KCMDCKNFEG SEERQALFHG DSANNIAYLQ QAANAAITGA IGSSGYGSPP  300
VSRKRKVQEL FFGGPAAKDT SFHRIAQFQQ TNHVKVSAPS SSWPSVPGAR VANNASVGPS  360
KFMYRSLLAD LIRPDDMKEL CAVLVAYTSE AARVLSDERN VKEKMTNNGE STLTSSSIDR  420
LQSPKEPNAQ KAVADESLSG IQAENPGLDE SGSDGSRGRP MSPGTLALMC DEQDTVFINS  480
GSNLLVNNHG SATYGHLPNG QVITESYAEQ EKMVLTAFRD CLNKLITLGE LKETQCSSLA  540
RSDSGGQSQM EAVENPTTKA RWDPFVNGFP RSAALPTTNP SQNNDNYTHL KIPFHAENGD  600
LKLKPEKDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	CPP family protein