PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960114.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 353aa MW: 38861.7 Da PI: 7.9642

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.7	2.3e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ XP_024960114.1 15 LPPGFRFHPTDEELVVHYLKKKAAAIPLPV-AIIAEVDLYKFDPWELPAKAAFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTA 108 79**************************.88***********988899***********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl XP_024960114.1 109 gGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 77788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MESTDSSTSS QQPQLPPGFR FHPTDEELVV HYLKKKAAAI PLPVAIIAEV DLYKFDPWEL 60 PAKAAFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTAGG TQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLIDNKSICK PPGCDPAKHK GSLRLDDWVL CRIYKKSNMQ 180 RPMEGDHHGG STGGDLTING MLQVSPPPCR LLNHHQGIIK PTGAGGCTGY NNIILENHHH 240 DQHNNISLFD NMLNSNVDDD NDNINNNNNN IASTSNLLSS SSPAAYTKMF LTTNSISGGS 300 PMGAQPTATT EENNNGSMGS LVLPQLHQQT MVMGPGESIF RQPYQLPDMN WYA

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MESTDSSTSS QQPQLPPGFR FHPTDEELVV HYLKKKAAAI PLPVAIIAEV DLYKFDPWEL  60
PAKAAFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTAGG TQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLIDNKSICK PPGCDPAKHK GSLRLDDWVL CRIYKKSNMQ  180
RPMEGDHHGG STGGDLTING MLQVSPPPCR LLNHHQGIIK PTGAGGCTGY NNIILENHHH  240
DQHNNISLFD NMLNSNVDDD NDNINNNNNN IASTSNLLSS SSPAAYTKMF LTTNSISGGS  300
PMGAQPTATT EENNNGSMGS LVLPQLHQQT MVMGPGESIF RQPYQLPDMN WYA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	7e-91	NAC family protein