PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960100.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 851aa MW: 94201.2 Da PI: 8.755

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960100.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.4	1.8e-18	759	839	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev++Lie+r e+++r++ k +++lWee+s +++ +g +rsp qCk+ w +l ++y++ k+ ++ +++++y+++++ XP_024960100.1 759 RWKPEEVKKLIEFRGELNSRFQVVKGRMALWEEISVNLSNEGSSRSPSQCKSLWASLIQKYEESKNEPES-----ERSWQYYEDMN 839 8***********************************************************99988887.....467****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence
MAMAGFSAIS PCHHRLWWQP NTSKLPVSCS MPLPSFTGTH GSRVSHKRSG RLEGPGKSME 60 DSVQRKMEKF YEGSNGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDHEDLGV 120 QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DLRTPIFASS FTMELIKKRL 180 KESGIFVPSR LKTFKTKKKF VAGPFEIEPI RVTHSIPDCS GLVLRCSDGI ILHTGDWKID 240 ESPLDGQVFD REGLEQLSKE GVTLMMSDST NILSPGRTLS ETVVADSLLR HISAAKGRVI 300 TTQFSSNIHR LGSVKAAADL TGRKLVFVGM SLRTYLDAAW KDGKAPIDPS TLVKVEDIND 360 YAPKDLLIVT TGSQAEPRAA LNLASYGSSH FFKLSKEDVI LYSAKVIPGN ESRVMKMFNR 420 LSEIGPTIVM GKKEQLHTSG HACREELEEV LRIVKPQHFL PIHGELLFLK EHELLGKSTG 480 IHHTVVIKNG EMLGVSHLRN RRVLSNGFIS LGKENLQLMY SDGDKAFGTA TDLCVDERVR 540 IASDGIIVVS IEIMRPQATE SAFKETIKGK IRITTRCLWL DDGKLLDALH SAAHAALSSC 600 SVKSPLPHIE RIVSELLRKM VRKYSGKRPE VITHAVENPA AVLADEINGK LSGVHHGFEI 660 PLAKTVDGSP KKKWTTKIQE SKSLDLSMGR HEIKGAATND DGMLSKEEIA TPSDSAESSV 720 PNSELSHDLS KANTKPESVG ESEDGSKGSN TKKPVKRNRW KPEEVKKLIE FRGELNSRFQ 780 VVKGRMALWE EISVNLSNEG SSRSPSQCKS LWASLIQKYE ESKNEPESER SWQYYEDMNT 840 ILSVPDAMVK K

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence

MAMAGFSAIS PCHHRLWWQP NTSKLPVSCS MPLPSFTGTH GSRVSHKRSG RLEGPGKSME  60
DSVQRKMEKF YEGSNGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDHEDLGV  120
QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DLRTPIFASS FTMELIKKRL  180
KESGIFVPSR LKTFKTKKKF VAGPFEIEPI RVTHSIPDCS GLVLRCSDGI ILHTGDWKID  240
ESPLDGQVFD REGLEQLSKE GVTLMMSDST NILSPGRTLS ETVVADSLLR HISAAKGRVI  300
TTQFSSNIHR LGSVKAAADL TGRKLVFVGM SLRTYLDAAW KDGKAPIDPS TLVKVEDIND  360
YAPKDLLIVT TGSQAEPRAA LNLASYGSSH FFKLSKEDVI LYSAKVIPGN ESRVMKMFNR  420
LSEIGPTIVM GKKEQLHTSG HACREELEEV LRIVKPQHFL PIHGELLFLK EHELLGKSTG  480
IHHTVVIKNG EMLGVSHLRN RRVLSNGFIS LGKENLQLMY SDGDKAFGTA TDLCVDERVR  540
IASDGIIVVS IEIMRPQATE SAFKETIKGK IRITTRCLWL DDGKLLDALH SAAHAALSSC  600
SVKSPLPHIE RIVSELLRKM VRKYSGKRPE VITHAVENPA AVLADEINGK LSGVHHGFEI  660
PLAKTVDGSP KKKWTTKIQE SKSLDLSMGR HEIKGAATND DGMLSKEEIA TPSDSAESSV  720
PNSELSHDLS KANTKPESVG ESEDGSKGSN TKKPVKRNRW KPEEVKKLIE FRGELNSRFQ  780
VVKGRMALWE EISVNLSNEG SSRSPSQCKS LWASLIQKYE ESKNEPESER SWQYYEDMNT  840
ILSVPDAMVK K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein