PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024960072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 320aa MW: 35812.9 Da PI: 9.1113 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.8e-12 | 143 | 189 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ +f L llP + kK++Ka++Le A +YI++Lq XP_024960072.1 143 DHMLAERKRREKLARRFISLSALLPDL-----KKMDKATVLEDAANYIQELQ 189 58899**********************.....9******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence |
MDFSSAWLSE LEMQDQGFMN QYQMIKPYHL VADFSVDSFS SESNTENPSV VGQAIQIPAS 60 IKETANNSKL PSYKKANSIN KNLTPIDEKP KTKPLPDVPN TFTISFGDLK PKDEVIPFKD 120 SFGYTTGTKK VPTVIRNRIQ LQDHMLAERK RREKLARRFI SLSALLPDLK KMDKATVLED 180 AANYIQELQS RVKELEGSSD LKTKNNMQSV ISAKRSKLGH TYEEGSSSDE ANYGESHSPS 240 NFEIEVRMSG SSVLVRIYCH KNYVSLVKVL SEMQKLGLLI TSSAALPFAN TTLLISIVAK 300 KMDDFSMTSN DLVKNLQLAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | ERKRRE |
2 | 149 | 154 | RKRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-37 | bHLH family protein |