PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960045.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 364aa MW: 39142.8 Da PI: 8.0091

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	60	114	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_024960045.1 60 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 114 79****************************************************8 PP
2	Myb_DNA-binding	71.7	1.1e-22	62	113	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ XP_024960045.1 62 RLRWTVELHERFVDAVAQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 113 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MFHSKKAAAA STTAMNSLHH NHHHHHERPN MCGVGGNNHS SPGAGTIQGD SGLVLTTDPK 60 PRLRWTVELH ERFVDAVAQL GGPDKATPKT IMRVMGVKGL TLYHLKSHLQ KFRLGKQPHK 120 EFNDHSIKDS ERASALELQR SSSASSSGMM GRSMNEMQIE VQRRLHEQLE VQRHLQLRIE 180 AQGKYMQTIL EKACQTLAGD QSMAAADYNN GNKVVGGNAT GISMNMNMNI SASTSSTSHL 240 EQAAAAAAGH RGGMMLLPGD HVPSAIKDFG SLNFPSFQDL NLYGTSPSPS PPAVTAAGSA 300 VGRKSPLIWS DDELHLQDDH HRPPEHHHIG VLSSNSSEGG GDGIGGSSEE IGQNVSKKTT 360 IVIQ

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MFHSKKAAAA STTAMNSLHH NHHHHHERPN MCGVGGNNHS SPGAGTIQGD SGLVLTTDPK  60
PRLRWTVELH ERFVDAVAQL GGPDKATPKT IMRVMGVKGL TLYHLKSHLQ KFRLGKQPHK  120
EFNDHSIKDS ERASALELQR SSSASSSGMM GRSMNEMQIE VQRRLHEQLE VQRHLQLRIE  180
AQGKYMQTIL EKACQTLAGD QSMAAADYNN GNKVVGGNAT GISMNMNMNI SASTSSTSHL  240
EQAAAAAAGH RGGMMLLPGD HVPSAIKDFG SLNFPSFQDL NLYGTSPSPS PPAVTAAGSA  300
VGRKSPLIWS DDELHLQDDH HRPPEHHHIG VLSSNSSEGG GDGIGGSSEE IGQNVSKKTT  360
IVIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-80	G2-like family protein