PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960003.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 762aa MW: 83558.3 Da PI: 4.6482

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.8	1.4e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f++ ++ e+e+ + + p +e LA+k +++ +qV +WFqNrR+ XP_024960003.1 13 RFNQAEIAEMEAILQAhkTAMPVREVLVSLAEKFsnseersgkiEVQMKQVWNWFQNRRYAI 74 58888899999998853477899999999999999999999999***************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MGRPPSNGGP SFRFNQAEIA EMEAILQAHK TAMPVREVLV SLAEKFSNSE ERSGKIEVQM 60 KQVWNWFQNR RYAIRAKAAK SPGKLNVTQM TRDDSAMVKG VPQATQPHGA SSATVRSLPQ 120 APQHPTGPSA VVRSFQQAPQ HPAAFSGRVA DNSQMEYEAK SARDGAWYDV STFLSHRSLE 180 TGDPEVLVRF AGFGAEEDEW VIVRKNVRQR SLPCESSECV AVLPADLILC FQEGKEQALY 240 FDAHVLDAQR RRHDVRGCRC RFLVRYDHDQ SEEIVALRKI CRRPETDYRL QQLHAVNESL 300 SANQNKNGAN NIHTVSTLRV YPPAEVQQKQ HKVEPVVPSL SAEVPQKRQK VESTFPAPPP 360 DGSQKHFKVE PAMVALSGVP QNQQRVQPAP PPRPPSEAPL YPNKVEPVLC LPSDQALVEP 420 HRVEPVVPCP SAQPSLEPNK VESVVPVPSA QDSAETQVAI MPTCSEKVPL ELHQVQPVMH 480 GPSTELSPTV VAPVEPKVAE SLKESMVSGT SVEVPSELEP ADDVSVVAQM ETKIAEPQKE 540 EPVVAVQVPS ELHEIQPMLS GLSTQVSVAA PLEPKVAEPQ KEELVSEVPS ELHQVQPMMP 600 GPLTEQVSIV APKIVEPQKE PMTPGDSIEV GSELHKVQPM MPVPLTQVLL AVAPMEANVG 660 EPQKEEPLEL RQVQPDELHT SVLEAIETKP EESVTTVEEI ETKAEEPVNS GNVIEQPKLA 720 EVMEGNVDDE EHAKDAENGN INEVGDPELQ VENAGTVEME EG

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MGRPPSNGGP SFRFNQAEIA EMEAILQAHK TAMPVREVLV SLAEKFSNSE ERSGKIEVQM  60
KQVWNWFQNR RYAIRAKAAK SPGKLNVTQM TRDDSAMVKG VPQATQPHGA SSATVRSLPQ  120
APQHPTGPSA VVRSFQQAPQ HPAAFSGRVA DNSQMEYEAK SARDGAWYDV STFLSHRSLE  180
TGDPEVLVRF AGFGAEEDEW VIVRKNVRQR SLPCESSECV AVLPADLILC FQEGKEQALY  240
FDAHVLDAQR RRHDVRGCRC RFLVRYDHDQ SEEIVALRKI CRRPETDYRL QQLHAVNESL  300
SANQNKNGAN NIHTVSTLRV YPPAEVQQKQ HKVEPVVPSL SAEVPQKRQK VESTFPAPPP  360
DGSQKHFKVE PAMVALSGVP QNQQRVQPAP PPRPPSEAPL YPNKVEPVLC LPSDQALVEP  420
HRVEPVVPCP SAQPSLEPNK VESVVPVPSA QDSAETQVAI MPTCSEKVPL ELHQVQPVMH  480
GPSTELSPTV VAPVEPKVAE SLKESMVSGT SVEVPSELEP ADDVSVVAQM ETKIAEPQKE  540
EPVVAVQVPS ELHEIQPMLS GLSTQVSVAA PLEPKVAEPQ KEELVSEVPS ELHQVQPMMP  600
GPLTEQVSIV APKIVEPQKE PMTPGDSIEV GSELHKVQPM MPVPLTQVLL AVAPMEANVG  660
EPQKEEPLEL RQVQPDELHT SVLEAIETKP EESVTTVEEI ETKAEEPVNS GNVIEQPKLA  720
EVMEGNVDDE EHAKDAENGN INEVGDPELQ VENAGTVEME EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-122	HB-other family protein