PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960002.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 766aa MW: 83943.7 Da PI: 4.6482

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.7	1.4e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f++ ++ e+e+ + + p +e LA+k +++ +qV +WFqNrR+ XP_024960002.1 13 RFNQAEIAEMEAILQAhkTAMPVREVLVSLAEKFsnseersgkiEVQMKQVWNWFQNRRYAI 74 58888899999998853477899999999999999999999999***************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MGRPPSNGGP SFRFNQAEIA EMEAILQAHK TAMPVREVLV SLAEKFSNSE ERSGKIEVQM 60 KQVWNWFQNR RYAIRAKAAK SPGKLNVTQM TRDDSAMVKG VPQATQPHGA SSATVRSLPQ 120 APQHPTGPSA VVRSFQQAPQ HPAAFSVQSA GRVADNSQME YEAKSARDGA WYDVSTFLSH 180 RSLETGDPEV LVRFAGFGAE EDEWVIVRKN VRQRSLPCES SECVAVLPAD LILCFQEGKE 240 QALYFDAHVL DAQRRRHDVR GCRCRFLVRY DHDQSEEIVA LRKICRRPET DYRLQQLHAV 300 NESLSANQNK NGANNIHTVS TLRVYPPAEV QQKQHKVEPV VPSLSAEVPQ KRQKVESTFP 360 APPPDGSQKH FKVEPAMVAL SGVPQNQQRV QPAPPPRPPS EAPLYPNKVE PVLCLPSDQA 420 LVEPHRVEPV VPCPSAQPSL EPNKVESVVP VPSAQDSAET QVAIMPTCSE KVPLELHQVQ 480 PVMHGPSTEL SPTVVAPVEP KVAESLKESM VSGTSVEVPS ELEPADDVSV VAQMETKIAE 540 PQKEEPVVAV QVPSELHEIQ PMLSGLSTQV SVAAPLEPKV AEPQKEELVS EVPSELHQVQ 600 PMMPGPLTEQ VSIVAPKIVE PQKEPMTPGD SIEVGSELHK VQPMMPVPLT QVLLAVAPME 660 ANVGEPQKEE PLELRQVQPD ELHTSVLEAI ETKPEESVTT VEEIETKAEE PVNSGNVIEQ 720 PKLAEVMEGN VDDEEHAKDA ENGNINEVGD PELQVENAGT VEMEEG

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MGRPPSNGGP SFRFNQAEIA EMEAILQAHK TAMPVREVLV SLAEKFSNSE ERSGKIEVQM  60
KQVWNWFQNR RYAIRAKAAK SPGKLNVTQM TRDDSAMVKG VPQATQPHGA SSATVRSLPQ  120
APQHPTGPSA VVRSFQQAPQ HPAAFSVQSA GRVADNSQME YEAKSARDGA WYDVSTFLSH  180
RSLETGDPEV LVRFAGFGAE EDEWVIVRKN VRQRSLPCES SECVAVLPAD LILCFQEGKE  240
QALYFDAHVL DAQRRRHDVR GCRCRFLVRY DHDQSEEIVA LRKICRRPET DYRLQQLHAV  300
NESLSANQNK NGANNIHTVS TLRVYPPAEV QQKQHKVEPV VPSLSAEVPQ KRQKVESTFP  360
APPPDGSQKH FKVEPAMVAL SGVPQNQQRV QPAPPPRPPS EAPLYPNKVE PVLCLPSDQA  420
LVEPHRVEPV VPCPSAQPSL EPNKVESVVP VPSAQDSAET QVAIMPTCSE KVPLELHQVQ  480
PVMHGPSTEL SPTVVAPVEP KVAESLKESM VSGTSVEVPS ELEPADDVSV VAQMETKIAE  540
PQKEEPVVAV QVPSELHEIQ PMLSGLSTQV SVAAPLEPKV AEPQKEELVS EVPSELHQVQ  600
PMMPGPLTEQ VSIVAPKIVE PQKEPMTPGD SIEVGSELHK VQPMMPVPLT QVLLAVAPME  660
ANVGEPQKEE PLELRQVQPD ELHTSVLEAI ETKPEESVTT VEEIETKAEE PVNSGNVIEQ  720
PKLAEVMEGN VDDEEHAKDA ENGNINEVGD PELQVENAGT VEMEEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-121	HB-other family protein