PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959891.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 604aa MW: 66602.6 Da PI: 6.4242

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	372	409	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + XP_024959891.1 372 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 409 664559******************************88 PP
2	BELL	125	2.9e-40	234	305	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+ q+k +kL+s+l+eVd+rYkqy++q+q+v+s+F+++ag+g+akpYt+lAl++iSrhFrcL+dai +qi XP_024959891.1 234 EKQDFQNKMTKLISMLDEVDRRYKQYYHQMQIVVSAFDVIAGCGTAKPYTALALQTISRHFRCLRDAINGQI 305 67999*****************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MSSYIPNSEN GRHSAPMLYL REPLQDSYSS ESPILAGNVM MYMNFSSASA GEFSGSLTRN 60 SQQPHNTCID IPNVGVHDSS VVSHQEFLSS MGEPWRDGRN HEMVLMDQMG SRNLQGQGQG 120 KGLSLSLGSH PGIQFHSSDY QNPNLGFSSF LSPDSVVENS SKDVSPYGIG NVSRAISDSK 180 YLKAAQQLLD EIVNVGKALK QHNSRKESTD DSKGVDGESK NVNQQESNEF SAAEKQDFQN 240 KMTKLISMLD EVDRRYKQYY HQMQIVVSAF DVIAGCGTAK PYTALALQTI SRHFRCLRDA 300 INGQIKEAQR SLGETDSTTN GKGVGISRLR FVDQQLKQQR ALQQIGMMQQ HTWRPQRGLP 360 ENSVSILRAW LFEHFLHPYP KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK 420 EEAGDAEMES NSSSEMAPKD TEGNRKTSAD QGEDKNQSTA ASSAFDSKSF NQAHNTEMVG 480 TSTDSDFQNM MLQSNRGERE RLVAAYQMQR RFGNRNGGGV SLTLGLQNCE DGSLPPMASI 540 GSHNHSFVDV RGGGGGGGGS GGRGVYDTAT GSSVEAETID FDCVDSSNRQ QRFGSSHLLH 600 DFVA

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MSSYIPNSEN GRHSAPMLYL REPLQDSYSS ESPILAGNVM MYMNFSSASA GEFSGSLTRN  60
SQQPHNTCID IPNVGVHDSS VVSHQEFLSS MGEPWRDGRN HEMVLMDQMG SRNLQGQGQG  120
KGLSLSLGSH PGIQFHSSDY QNPNLGFSSF LSPDSVVENS SKDVSPYGIG NVSRAISDSK  180
YLKAAQQLLD EIVNVGKALK QHNSRKESTD DSKGVDGESK NVNQQESNEF SAAEKQDFQN  240
KMTKLISMLD EVDRRYKQYY HQMQIVVSAF DVIAGCGTAK PYTALALQTI SRHFRCLRDA  300
INGQIKEAQR SLGETDSTTN GKGVGISRLR FVDQQLKQQR ALQQIGMMQQ HTWRPQRGLP  360
ENSVSILRAW LFEHFLHPYP KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK  420
EEAGDAEMES NSSSEMAPKD TEGNRKTSAD QGEDKNQSTA ASSAFDSKSF NQAHNTEMVG  480
TSTDSDFQNM MLQSNRGERE RLVAAYQMQR RFGNRNGGGV SLTLGLQNCE DGSLPPMASI  540
GSHNHSFVDV RGGGGGGGGS GGRGVYDTAT GSSVEAETID FDCVDSSNRQ QRFGSSHLLH  600
DFVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-128	TALE family protein