PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959800.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 275aa    MW: 30792.6 Da    PI: 6.1864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12118161855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f++L  llP++     +K +K++i+ +Av +Ik Lq
  XP_024959800.1 118 TERERRKKMRNMFHQLHALLPQL----PPKADKSTIVDEAVSHIKTLQ 161
                     6*********************6....39******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MAEESGQEGF FWDTYPWVMA DKSGGVSGDD DKSAGDDKKP IINSTVTHDH SKMKQSEMEA  60
LGGLNGGHDQ EPVTTTVGGD GGQLRNEMKN DDNKKVSLDS DKGKGDPESN DHDFHIWTER  120
ERRKKMRNMF HQLHALLPQL PPKADKSTIV DEAVSHIKTL QETLQKLHTQ KLERLHGLSA  180
FQTWTSSNVT LNVCGLDAHI SICSPRKPGL LTAICFVMEK HKLEIVSAQI SSDQTTSLFM  240
IHARASSRDQ FLETFPYEEV FKQAATEIML WVNSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-23bHLH family protein