PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024959706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | SBP | ||||||||
Protein Properties | Length: 196aa MW: 21376 Da PI: 9.651 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132 | 2.1e-41 | 85 | 162 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl+ ak+yhrrhkvCevhskapvv+v+g+ qrfCqqCsrfhe+sefD+++rsCr+rLa+hnerrrk+++ XP_024959706.1 85 CCQVDSCAADLAVAKRYHRRHKVCEVHSKAPVVVVAGILQRFCQQCSRFHEVSEFDDARRSCRSRLAGHNERRRKSSS 162 6**************************************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MDSRNRSPRN PTIVLKFKNP SMAMEQLAED DYLDDDAEES GQGYLQFGAN GGIKKKKMVD 60 SGAGGGGSGK RETAAINGGR MTPSCCQVDS CAADLAVAKR YHRRHKVCEV HSKAPVVVVA 120 GILQRFCQQC SRFHEVSEFD DARRSCRSRL AGHNERRRKS SSEATSVDIQ GSSLGQVGDR 180 RSRTPVALGG ERFRIG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.1 | 3e-39 | SBP family protein |