PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959706.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SBP
Protein Properties Length: 196aa    MW: 21376 Da    PI: 9.651
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322.1e-4185162178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C+adl+ ak+yhrrhkvCevhskapvv+v+g+ qrfCqqCsrfhe+sefD+++rsCr+rLa+hnerrrk+++
  XP_024959706.1  85 CCQVDSCAADLAVAKRYHRRHKVCEVHSKAPVVVVAGILQRFCQQCSRFHEVSEFDDARRSCRSRLAGHNERRRKSSS 162
                     6**************************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MDSRNRSPRN PTIVLKFKNP SMAMEQLAED DYLDDDAEES GQGYLQFGAN GGIKKKKMVD  60
SGAGGGGSGK RETAAINGGR MTPSCCQVDS CAADLAVAKR YHRRHKVCEV HSKAPVVVVA  120
GILQRFCQQC SRFHEVSEFD DARRSCRSRL AGHNERRRKS SSEATSVDIQ GSSLGQVGDR  180
RSRTPVALGG ERFRIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.13e-39SBP family protein