PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959629.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 294aa    MW: 33551.3 Da    PI: 6.0101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed +l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_024959629.1 20 KGPWSPAEDVRLISFIQKHGHPNWRSLPKQAGLLRCGKSCRLRWINYL 67
                     79******************************99************97 PP
2Myb_DNA-binding49.87.8e-1673118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+  ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
   XP_024959629.1  73 RGNFTPQEEHSIIRLHATYGNK-WSKIASQLP-GRTDNEIKNVWNTHL 118
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGGGGRGGRS PCCDKSKVKK GPWSPAEDVR LISFIQKHGH PNWRSLPKQA GLLRCGKSCR  60
LRWINYLRPD VKRGNFTPQE EHSIIRLHAT YGNKWSKIAS QLPGRTDNEI KNVWNTHLKK  120
RSSLLITTPS SSPANFYHNS QTIIRNQEIS YQQAEAHENS KDIDDHQPTS SNNDSGDQDK  180
MVFTGPHHDE AIENNHSIVE MLPLEFEVDQ FWNMLDDIQL HDHNSEPFMM SGDHENGPQM  240
EVDKWLRLLE EELGLVGPTP TAASANQQDG EISKSKDKDE DDNDNDDMMM MIRW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-69MYB family protein