PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024959414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 655aa MW: 73094.6 Da PI: 4.3862 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 616 | 653 | 7 | 44 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 + + +e L + F++n+yp++++re LAk+l+Lt +qV XP_024959414.1 616 LGEAATESLYQSFKENQYPDRDARENLAKELNLTHTQV 653 56678999*****************************9 PP | |||||||
2 | PHD | 39.8 | 1e-13 | 287 | 342 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCd +C++ fH+ Cl+++l +e++p g wlC+ C++k XP_024959414.1 287 FCAKCGQteVQLDNDIILCDgECERGFHQFCLDPPLLKEQVPPGdeGWLCPACDCK 342 6******75556********56********************9999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence |
MDVSSQKKFV QDRKNLATGQ VVFESNQEVN AECACDEKAL KNHEIMGNHK RIEVFNGSPN 60 HEPVDLTGMI SSPRKTTSEH EHGMEEIQPP KLGHPPEDGS KYSSLEQIEA NQENETKKLS 120 QSGNQKRGRP KKRERMVTGS PRVLRSRSQE KPKVPESVDA PAQDAESDGK KRRKTKKIKK 180 DQNNEFSKIK THLRYLLSRM SYEQNYIEAY AGEGWKGQSA EKIKPEKELE RARSDINRYK 240 LKIRDLFQRI DSSLEEGKIP ESLYDSEGLI DSEDEIAYTS LLFWQIFCAK CGQTEVQLDN 300 DIILCDGECE RGFHQFCLDP PLLKEQVPPG DEGWLCPACD CKVDCIDLLN DSQGADLSIG 360 DSWEKVFPET AASGNKLDDT LGLPSDDSED DDYNPDGPEV EKVEEEADGE ESSSDESDFS 420 SASEDLGAVA NNEQSLGLPS DDSEDDDDFN PDRVDSDEQA KTKSSSSDFT SDSEDLGDIN 480 KNEGTSPEVQ GSLMPEDDEE ITKASMEDDD SGPITAKRKV ARLDYKKLHD ETYGNASSDS 540 SDEEFLDTEA PRKQKNTKGA KDVDFNQQQK ISVFTPVRRT NKKLDVEGIS SSPAHVGSSA 600 PGSSDRSGTK SSYRRLGEAA TESLYQSFKE NQYPDRDARE NLAKELNLTH TQVDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 174 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 8e-79 | HB-PHD family protein |