PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959413.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-PHD

Protein Properties

Length: 747aa MW: 83224.9 Da PI: 4.7243

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.1	8.5e-15	605	650	7	52
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + + +e L + F++n+yp++++re LAk+l+Lt +qV+ WF N R XP_024959413.1 605 LGEAATESLYQSFKENQYPDRDARENLAKELNLTHTQVSKWFENAR 650 56678999************************************99 PP
2	PHD	39.6	1.2e-13	276	331	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCd +C++ fH+ Cl+++l +e++p g wlC+ C++k XP_024959413.1 276 FCAKCGQteVQLDNDIILCDgECERGFHQFCLDPPLLKEQVPPGdeGWLCPACDCK 331 6****75556****56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MDVSSQKKFV QDRKNLATGQ VVFESNQEVN AECACDEKAL KNHEIMGNHK RIEVFNGSPN 60 HEPVDLTGMI SSPRKTTSEH EHGMEEIQPP KLGHPPEDGS KYSSLEQIEA NQENETKKLS 120 QSGNQKRGRP KKRERMVTGS PRVLRSRSQE KPKVPESVDA PAQDAESDGK KRRKTKKIKK 180 DQNNEFSKIK THLRYLLSRM SYEQNYIEAY AGEGWKGQSA EKIKPEKELE RARSDINRYK 240 LKIRDLFQRI DSSLEEGKIP ESLYDSEGLI DSEDIFCAKC GQTEVQLDND IILCDGECER 300 GFHQFCLDPP LLKEQVPPGD EGWLCPACDC KVDCIDLLND SQGADLSIGD SWEKVFPETA 360 ASGNKLDDTL GLPSDDSEDD DYNPDGPEVE KVEEEADGEE SSSDESDFSS ASEDLGAVAN 420 NEQSLGLPSD DSEDDDDFNP DRVDSDEQAK TKSSSSDFTS DSEDLGDINK NEGTSPEVQG 480 SLMPEDDEEI TKASMEDDDS GPITAKRKVA RLDYKKLHDE TYGNASSDSS DEEFLDTEAP 540 RKQKNTKGAK DVDFNQQQKI SVFTPVRRTN KKLDVEGISS SPAHVGSSAP GSSDRSGTKS 600 SYRRLGEAAT ESLYQSFKEN QYPDRDAREN LAKELNLTHT QVSKWFENAR WSFNHPGKRS 660 KIVKSQHESS TSLATENAAG HKTVEKKQSD KASAEKLVTK QMNETSSTPP KSRKRKGKTD 720 DEDSVMSPSL KDGSSNRRSG RVQAKRS

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MDVSSQKKFV QDRKNLATGQ VVFESNQEVN AECACDEKAL KNHEIMGNHK RIEVFNGSPN  60
HEPVDLTGMI SSPRKTTSEH EHGMEEIQPP KLGHPPEDGS KYSSLEQIEA NQENETKKLS  120
QSGNQKRGRP KKRERMVTGS PRVLRSRSQE KPKVPESVDA PAQDAESDGK KRRKTKKIKK  180
DQNNEFSKIK THLRYLLSRM SYEQNYIEAY AGEGWKGQSA EKIKPEKELE RARSDINRYK  240
LKIRDLFQRI DSSLEEGKIP ESLYDSEGLI DSEDIFCAKC GQTEVQLDND IILCDGECER  300
GFHQFCLDPP LLKEQVPPGD EGWLCPACDC KVDCIDLLND SQGADLSIGD SWEKVFPETA  360
ASGNKLDDTL GLPSDDSEDD DYNPDGPEVE KVEEEADGEE SSSDESDFSS ASEDLGAVAN  420
NEQSLGLPSD DSEDDDDFNP DRVDSDEQAK TKSSSSDFTS DSEDLGDINK NEGTSPEVQG  480
SLMPEDDEEI TKASMEDDDS GPITAKRKVA RLDYKKLHDE TYGNASSDSS DEEFLDTEAP  540
RKQKNTKGAK DVDFNQQQKI SVFTPVRRTN KKLDVEGISS SPAHVGSSAP GSSDRSGTKS  600
SYRRLGEAAT ESLYQSFKEN QYPDRDAREN LAKELNLTHT QVSKWFENAR WSFNHPGKRS  660
KIVKSQHESS TSLATENAAG HKTVEKKQSD KASAEKLVTK QMNETSSTPP KSRKRKGKTD  720
DEDSVMSPSL KDGSSNRRSG RVQAKRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	174	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-82	HB-PHD family protein