PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959380.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 704aa MW: 78136.4 Da PI: 9.0077

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.2	1.2e-19	612	692	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +e+++Li++r e+++r++ k +++lWee+s k++e g +rsp qCk+ w +l ++y++ k+ ++++ ++++y+++++ XP_024959380.1 612 RWKPDEIKKLIKFRGELNSRFQVVKGRMALWEEISVKLSEAGSSRSPGQCKSLWASLVQKYEESKNESESK-----RSWQYYEEMD 692 8***********************************************************999988874.....57*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MGMKITLVIP ALDQRTPIFA SSFTMELIKK RLKESGIFVP SRLKTFKTKR KFVAGPFEIE 60 PIRVTHSIPD CSGLVLRCSD GIILHTGDWK IDESPLDGQV FDREGLEQLS KEGVTLMMSD 120 STNVLSPGRT LSETVVADSL LRNISAAKGR VITTQFSSNI HRLGSVKAAA DLTGRKLVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVNVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS 240 SHFFKLSKED VILYSAKVIP GNESRVMKML NRLSEIGPTI VMGKNEQLHT SGHAYREELE 300 EVLRIVKPQH FLPIHGELLF LKEHELLGRS TGIHHTAVIK NGEMLGVSHL RNRRVLSNGF 360 IALGKENLQL MYSDGDKAFG TSTDLCVDER MRIASDGIIV VSIEIMRPQS AAQSADSVFK 420 ETLKGKIRIT TRCLWLDNGK LLDALHSAAH AALSSCSVKS PLPHLERTVS EVLRKMVRKY 480 SGKRPEVITH AIENPAAVLA NEISEKLSGG FEIPLEEKVD GSSKKKRRTK IQEGSKNLVS 540 VGPHETKDDV INNDRLLSEE EIATSSNSTG SSVPDSESSD DFWKAYTKSE SVDESENGSK 600 GSKTNKPMRR NRWKPDEIKK LIKFRGELNS RFQVVKGRMA LWEEISVKLS EAGSSRSPGQ 660 CKSLWASLVQ KYEESKNESE SKRSWQYYEE MDNILSAPDE MVNK

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MGMKITLVIP ALDQRTPIFA SSFTMELIKK RLKESGIFVP SRLKTFKTKR KFVAGPFEIE  60
PIRVTHSIPD CSGLVLRCSD GIILHTGDWK IDESPLDGQV FDREGLEQLS KEGVTLMMSD  120
STNVLSPGRT LSETVVADSL LRNISAAKGR VITTQFSSNI HRLGSVKAAA DLTGRKLVFV  180
GMSLRTYLDA AWKDGKAPID PSTLVNVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS  240
SHFFKLSKED VILYSAKVIP GNESRVMKML NRLSEIGPTI VMGKNEQLHT SGHAYREELE  300
EVLRIVKPQH FLPIHGELLF LKEHELLGRS TGIHHTAVIK NGEMLGVSHL RNRRVLSNGF  360
IALGKENLQL MYSDGDKAFG TSTDLCVDER MRIASDGIIV VSIEIMRPQS AAQSADSVFK  420
ETLKGKIRIT TRCLWLDNGK LLDALHSAAH AALSSCSVKS PLPHLERTVS EVLRKMVRKY  480
SGKRPEVITH AIENPAAVLA NEISEKLSGG FEIPLEEKVD GSSKKKRRTK IQEGSKNLVS  540
VGPHETKDDV INNDRLLSEE EIATSSNSTG SSVPDSESSD DFWKAYTKSE SVDESENGSK  600
GSKTNKPMRR NRWKPDEIKK LIKFRGELNS RFQVVKGRMA LWEEISVKLS EAGSSRSPGQ  660
CKSLWASLVQ KYEESKNESE SKRSWQYYEE MDNILSAPDE MVNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	524	528	KKKRR
2	525	530	KKRRTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein