PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024959379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 704aa MW: 78136.4 Da PI: 9.0077 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.2 | 1.2e-19 | 612 | 692 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +e+++Li++r e+++r++ k +++lWee+s k++e g +rsp qCk+ w +l ++y++ k+ ++++ ++++y+++++ XP_024959379.1 612 RWKPDEIKKLIKFRGELNSRFQVVKGRMALWEEISVKLSEAGSSRSPGQCKSLWASLVQKYEESKNESESK-----RSWQYYEEMD 692 8*************************************************************999988874.....57*******8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence |
MGMKITLVIP ALDQRTPIFA SSFTMELIKK RLKESGIFVP SRLKTFKTKR KFVAGPFEIE 60 PIRVTHSIPD CSGLVLRCSD GIILHTGDWK IDESPLDGQV FDREGLEQLS KEGVTLMMSD 120 STNVLSPGRT LSETVVADSL LRNISAAKGR VITTQFSSNI HRLGSVKAAA DLTGRKLVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVNVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS 240 SHFFKLSKED VILYSAKVIP GNESRVMKML NRLSEIGPTI VMGKNEQLHT SGHAYREELE 300 EVLRIVKPQH FLPIHGELLF LKEHELLGRS TGIHHTAVIK NGEMLGVSHL RNRRVLSNGF 360 IALGKENLQL MYSDGDKAFG TSTDLCVDER MRIASDGIIV VSIEIMRPQS AAQSADSVFK 420 ETLKGKIRIT TRCLWLDNGK LLDALHSAAH AALSSCSVKS PLPHLERTVS EVLRKMVRKY 480 SGKRPEVITH AIENPAAVLA NEISEKLSGG FEIPLEEKVD GSSKKKRRTK IQEGSKNLVS 540 VGPHETKDDV INNDRLLSEE EIATSSNSTG SSVPDSESSD DFWKAYTKSE SVDESENGSK 600 GSKTNKPMRR NRWKPDEIKK LIKFRGELNS RFQVVKGRMA LWEEISVKLS EAGSSRSPGQ 660 CKSLWASLVQ KYEESKNESE SKRSWQYYEE MDNILSAPDE MVNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 524 | 528 | KKKRR |
2 | 525 | 530 | KKRRTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |