PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959378.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 852aa MW: 94574.2 Da PI: 8.9309

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.9	1.5e-19	760	840	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +e+++Li++r e+++r++ k +++lWee+s k++e g +rsp qCk+ w +l ++y++ k+ ++++ ++++y+++++ XP_024959378.1 760 RWKPDEIKKLIKFRGELNSRFQVVKGRMALWEEISVKLSEAGSSRSPGQCKSLWASLVQKYEESKNESESK-----RSWQYYEEMD 840 8***********************************************************999988874.....57*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence
MAMAAFSAVS HCHHRLWWRP NTSKLPVSCS MPPPSFTGTR GSRVGHKRSG RLEGAGKSME 60 DSVQRKMEKF YEGSNGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDELGV 120 QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DQRTPIFASS FTMELIKKRL 180 KESGIFVPSR LKTFKTKRKF VAGPFEIEPI RVTHSIPDCS GLVLRCSDGI ILHTGDWKID 240 ESPLDGQVFD REGLEQLSKE GVTLMMSDST NVLSPGRTLS ETVVADSLLR NISAAKGRVI 300 TTQFSSNIHR LGSVKAAADL TGRKLVFVGM SLRTYLDAAW KDGKAPIDPS TLVNVEDIDA 360 YAPKDLLIVT TGSQAEPRAA LNLASYGSSH FFKLSKEDVI LYSAKVIPGN ESRVMKMLNR 420 LSEIGPTIVM GKNEQLHTSG HAYREELEEV LRIVKPQHFL PIHGELLFLK EHELLGRSTG 480 IHHTAVIKNG EMLGVSHLRN RRVLSNGFIA LGKENLQLMY SDGDKAFGTS TDLCVDERMR 540 IASDGIIVVS IEIMRPQSAA QSADSVFKET LKGKIRITTR CLWLDNGKLL DALHSAAHAA 600 LSSCSVKSPL PHLERTVSEV LRKMVRKYSG KRPEVITHAI ENPAAVLANE ISEKLSGGFE 660 IPLEEKVDGS SKKKRRTKIQ EGSKNLVSVG PHETKDDVIN NDRLLSEEEI ATSSNSTGSS 720 VPDSESSDDF WKAYTKSESV DESENGSKGS KTNKPMRRNR WKPDEIKKLI KFRGELNSRF 780 QVVKGRMALW EEISVKLSEA GSSRSPGQCK SLWASLVQKY EESKNESESK RSWQYYEEMD 840 NILSAPDEMV NK

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence

MAMAAFSAVS HCHHRLWWRP NTSKLPVSCS MPPPSFTGTR GSRVGHKRSG RLEGAGKSME  60
DSVQRKMEKF YEGSNGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDELGV  120
QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DQRTPIFASS FTMELIKKRL  180
KESGIFVPSR LKTFKTKRKF VAGPFEIEPI RVTHSIPDCS GLVLRCSDGI ILHTGDWKID  240
ESPLDGQVFD REGLEQLSKE GVTLMMSDST NVLSPGRTLS ETVVADSLLR NISAAKGRVI  300
TTQFSSNIHR LGSVKAAADL TGRKLVFVGM SLRTYLDAAW KDGKAPIDPS TLVNVEDIDA  360
YAPKDLLIVT TGSQAEPRAA LNLASYGSSH FFKLSKEDVI LYSAKVIPGN ESRVMKMLNR  420
LSEIGPTIVM GKNEQLHTSG HAYREELEEV LRIVKPQHFL PIHGELLFLK EHELLGRSTG  480
IHHTAVIKNG EMLGVSHLRN RRVLSNGFIA LGKENLQLMY SDGDKAFGTS TDLCVDERMR  540
IASDGIIVVS IEIMRPQSAA QSADSVFKET LKGKIRITTR CLWLDNGKLL DALHSAAHAA  600
LSSCSVKSPL PHLERTVSEV LRKMVRKYSG KRPEVITHAI ENPAAVLANE ISEKLSGGFE  660
IPLEEKVDGS SKKKRRTKIQ EGSKNLVSVG PHETKDDVIN NDRLLSEEEI ATSSNSTGSS  720
VPDSESSDDF WKAYTKSESV DESENGSKGS KTNKPMRRNR WKPDEIKKLI KFRGELNSRF  780
QVVKGRMALW EEISVKLSEA GSSRSPGQCK SLWASLVQKY EESKNESESK RSWQYYEEMD  840
NILSAPDEMV NK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	672	676	KKKRR
2	673	678	KKRRTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein