PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959183.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 1289aa MW: 141268 Da PI: 6.2843

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.6e-09	615	658	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE e+++d ++G++ +++Ia+ + ++t +c+++++ky XP_024959183.1 615 NPWTIEEKEIFLDKYSLFGKN-FRKIASFLE-HKTIADCVEFYYKY 658 58***************99.*****.***********9 PP
2	Myb_DNA-binding	23.9	9.6e-08	831	870	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W eE + +av+ +G++ ++ I+r+m +R+ +c+ ++ XP_024959183.1 831 WMDEEKSSFMQAVRSYGKD-FSMISRYMR-TRSTDECRVFFS 870 999************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1289 aa Download sequence
MGDHSITKRT TGSQGLDKED SLDWKPLKWI RSGSLSSRGS GFSHSSSCKI IRLDSLDTKI 60 DAQLGNSTPV QSPSGDVVLC LTPRTPADEV SSRKKPRLGW GEGLAKYEKK KVGPYDIVDK 120 ESGARNGMVD GVSCSEPLLS SPSNLLDKSP SLTGCSESAS PTTPYSFACS SSPGLEEKDG 180 SIKAATVDNG TCNPNVASLH LSQNHTEGLA FNLENLEITE GFNLSSSLEE LLQSDESGAP 240 GNGFVESTAM DKLQVWKADI SRTLEITETE IDSLEHELKL LISDGGSCPF PAASSSSPTE 300 RNNKNPGKRF VHLPLKIISS VDMLMEKADG FLEERTGAED LDRKSPGTAT SKLVKPLALC 360 NNVKHPDAVE RKDSPSNLDI RSEQAKFPPH HANDDMVGVV NSCRDGSQVP TGSGHTIPIG 420 GDVYYGSENK LCDMILASNR DLANRASDAF SKMLPTTHLR TNISSATDVS LIKKKMVMRK 480 RFIKFKERVI TLKFRALQYP WKEDLRLLSI KRFSAKSQKK FELSSRMGYA DHQKHDSSSH 540 SRLSSAGSLS LVPTTEIVDY VKKLLSDSQI KIYKNTLKMP SFMLDKREYI ASRFISDNGL 600 LENPIDVEKE RSIVNPWTIE EKEIFLDKYS LFGKNFRKIA SFLEHKTIAD CVEFYYKYHK 660 SDFFQKTKKN KKFANGKSYT ANIYLVTSGK RLNRDTNATS LDMLGAASAT VANMDDGMQK 720 QHKYTANCYV GSSSDKKLPG GDVGILERSN NFAMSCNEQE TAAADVLAGI CGSMSSDALS 780 SCITSSVEPG RRCQKLGGSS LHLTPEGTLD DVDEDTCSDN SCGEDMDPCD WMDEEKSSFM 840 QAVRSYGKDF SMISRYMRTR STDECRVFFS KARKCLGLDV IHLEAGSEGT TGANQGGGSD 900 HEDACGSVVS HDKSSSECNK IDLHSSDIRE EHAESDRNGC REPELMLENL VSHAEKKPQV 960 ELIGESGCSN RNLEGAADSE ATETTNAHQN MYSEGSVEEM NDYSSATGVA KVSAKICRQG 1020 IRESEHPLPS FNGNTSSSVR RLSSCPAEDL NFASHYSRGT CLDLSIDRGN NMELNASSEN 1080 GFLMLNFFPK DPGFGKTLSQ DDVSSRRLSF RKSGDQRCSS MDGYHLHLSK RSLLDCEESS 1140 HILPVSIPSA KEGKNGSLSW HEPQSNFKLE EMDCSVSQEP RQSCSLERPR RSGDVKLFGQ 1200 ILTNLSGSNA NGSARESSSI GKPNGGRLFN LEFDNDKKNV PPSRSYGFWD GNRIQTLPDS 1260 AMLLAKYPAA FSNTSSSKFD SCSLNQTSD

Sequence ? help Back to Top

Protein Sequence Length: 1289 aa Download sequence

MGDHSITKRT TGSQGLDKED SLDWKPLKWI RSGSLSSRGS GFSHSSSCKI IRLDSLDTKI  60
DAQLGNSTPV QSPSGDVVLC LTPRTPADEV SSRKKPRLGW GEGLAKYEKK KVGPYDIVDK  120
ESGARNGMVD GVSCSEPLLS SPSNLLDKSP SLTGCSESAS PTTPYSFACS SSPGLEEKDG  180
SIKAATVDNG TCNPNVASLH LSQNHTEGLA FNLENLEITE GFNLSSSLEE LLQSDESGAP  240
GNGFVESTAM DKLQVWKADI SRTLEITETE IDSLEHELKL LISDGGSCPF PAASSSSPTE  300
RNNKNPGKRF VHLPLKIISS VDMLMEKADG FLEERTGAED LDRKSPGTAT SKLVKPLALC  360
NNVKHPDAVE RKDSPSNLDI RSEQAKFPPH HANDDMVGVV NSCRDGSQVP TGSGHTIPIG  420
GDVYYGSENK LCDMILASNR DLANRASDAF SKMLPTTHLR TNISSATDVS LIKKKMVMRK  480
RFIKFKERVI TLKFRALQYP WKEDLRLLSI KRFSAKSQKK FELSSRMGYA DHQKHDSSSH  540
SRLSSAGSLS LVPTTEIVDY VKKLLSDSQI KIYKNTLKMP SFMLDKREYI ASRFISDNGL  600
LENPIDVEKE RSIVNPWTIE EKEIFLDKYS LFGKNFRKIA SFLEHKTIAD CVEFYYKYHK  660
SDFFQKTKKN KKFANGKSYT ANIYLVTSGK RLNRDTNATS LDMLGAASAT VANMDDGMQK  720
QHKYTANCYV GSSSDKKLPG GDVGILERSN NFAMSCNEQE TAAADVLAGI CGSMSSDALS  780
SCITSSVEPG RRCQKLGGSS LHLTPEGTLD DVDEDTCSDN SCGEDMDPCD WMDEEKSSFM  840
QAVRSYGKDF SMISRYMRTR STDECRVFFS KARKCLGLDV IHLEAGSEGT TGANQGGGSD  900
HEDACGSVVS HDKSSSECNK IDLHSSDIRE EHAESDRNGC REPELMLENL VSHAEKKPQV  960
ELIGESGCSN RNLEGAADSE ATETTNAHQN MYSEGSVEEM NDYSSATGVA KVSAKICRQG  1020
IRESEHPLPS FNGNTSSSVR RLSSCPAEDL NFASHYSRGT CLDLSIDRGN NMELNASSEN  1080
GFLMLNFFPK DPGFGKTLSQ DDVSSRRLSF RKSGDQRCSS MDGYHLHLSK RSLLDCEESS  1140
HILPVSIPSA KEGKNGSLSW HEPQSNFKLE EMDCSVSQEP RQSCSLERPR RSGDVKLFGQ  1200
ILTNLSGSNA NGSARESSSI GKPNGGRLFN LEFDNDKKNV PPSRSYGFWD GNRIQTLPDS  1260
AMLLAKYPAA FSNTSSSKFD SCSLNQTSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-109	MYB family protein