PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959168.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 1411aa MW: 154431 Da PI: 6.5602

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	737	780	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE e+++d ++G++ +++Ia+ + ++t +c+++++ky XP_024959168.1 737 NPWTIEEKEIFLDKYSLFGKN-FRKIASFLE-HKTIADCVEFYYKY 780 58***************99.*****.***********9 PP
2	Myb_DNA-binding	23.8	1.1e-07	953	992	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W eE + +av+ +G++ ++ I+r+m +R+ +c+ ++ XP_024959168.1 953 WMDEEKSSFMQAVRSYGKD-FSMISRYMR-TRSTDECRVFFS 992 999************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1411 aa Download sequence
MPPEPLPFDR KDFFKARKPS SSDPVGTVPP QWREPPTTPS NHNNRGSSSS CRLAGGGPSD 60 FRQPFSGYDK AVSGGFHVTT VESGSREYKY CKNDNSKENN TNNSRMSVAL GSQKPLKGGN 120 SWATTLSLNV STTGSQGLDK EDSLDWKPLK WIRSGSLSSR GSGFSHSSSC KIIRLDSLDT 180 KIDAQLGNST PVQSPSGDVV LCLTPRTPAD EVSSRKKPRL GWGEGLAKYE KKKVGPYDIV 240 DKESGARNGM VDGVSCSEPL LSSPSNLLDK SPSLTGCSES ASPTTPYSFA CSSSPGLEEK 300 DGSIKAATVD NGTCNPNVAS LHLSQNHTEG LAFNLENLEI TEGFNLSSSL EELLQSDESG 360 APGNGFVEST AMDKLQVWKA DISRTLEITE TEIDSLEHEL KLLISDGGSC PFPAASSSSP 420 TERNNKNPGK RFVHLPLKII SSVDMLMEKA DGFLEERTGA EDLDRKSPGT ATSKLVKPLA 480 LCNNVKHPDA VERKDSPSNL DIRSEQAKFP PHHANDDMVG VVNSCRDGSQ VPTGSGHTIP 540 IGGDVYYGSE NKLCDMILAS NRDLANRASD AFSKMLPTTH LRTNISSATD VSLIKKKMVM 600 RKRFIKFKER VITLKFRALQ YPWKEDLRLL SIKRFSAKSQ KKFELSSRMG YADHQKHDSS 660 SHSRLSSAGS LSLVPTTEIV DYVKKLLSDS QIKIYKNTLK MPSFMLDKRE YIASRFISDN 720 GLLENPIDVE KERSIVNPWT IEEKEIFLDK YSLFGKNFRK IASFLEHKTI ADCVEFYYKY 780 HKSDFFQKTK KNKKFANGKS YTANIYLVTS GKRLNRDTNA TSLDMLGAAS ATVANMDDGM 840 QKQHKYTANC YVGSSSDKKL PGGDVGILER SNNFAMSCNE QETAAADVLA GICGSMSSDA 900 LSSCITSSVE PGRRCQKLGG SSLHLTPEGT LDDVDEDTCS DNSCGEDMDP CDWMDEEKSS 960 FMQAVRSYGK DFSMISRYMR TRSTDECRVF FSKARKCLGL DVIHLEAGSE GTTGANQGGG 1020 SDHEDACGSV VSHDKSSSEC NKIDLHSSDI REEHAESDRN GCREPELMLE NLVSHAEKKP 1080 QVELIGESGC SNRNLEGAAD SEATETTNAH QNMYSEGSVE EMNDYSSATG VAKVSAKICR 1140 QGIRESEHPL PSFNGNTSSS VRRLSSCPAE DLNFASHYSR GTCLDLSIDR GNNMELNASS 1200 ENGFLMLNFF PKDPGFGKTL SQDDVSSRRL SFRKSGDQRC SSMDGYHLHL SKRSLLDCEE 1260 SSHILPVSIP SAKEGKNGSL SWHEPQSNFK LEEMDCSVSQ EPRQSCSLER PRRSGDVKLF 1320 GQILTNLSGS NANGSARESS SIGKPNGGRL FNLEFDNDKK NVPPSRSYGF WDGNRIQTLP 1380 DSAMLLAKYP AAFSNTSSSK FDSCSLNQTS D

Sequence ? help Back to Top

Protein Sequence Length: 1411 aa Download sequence

MPPEPLPFDR KDFFKARKPS SSDPVGTVPP QWREPPTTPS NHNNRGSSSS CRLAGGGPSD  60
FRQPFSGYDK AVSGGFHVTT VESGSREYKY CKNDNSKENN TNNSRMSVAL GSQKPLKGGN  120
SWATTLSLNV STTGSQGLDK EDSLDWKPLK WIRSGSLSSR GSGFSHSSSC KIIRLDSLDT  180
KIDAQLGNST PVQSPSGDVV LCLTPRTPAD EVSSRKKPRL GWGEGLAKYE KKKVGPYDIV  240
DKESGARNGM VDGVSCSEPL LSSPSNLLDK SPSLTGCSES ASPTTPYSFA CSSSPGLEEK  300
DGSIKAATVD NGTCNPNVAS LHLSQNHTEG LAFNLENLEI TEGFNLSSSL EELLQSDESG  360
APGNGFVEST AMDKLQVWKA DISRTLEITE TEIDSLEHEL KLLISDGGSC PFPAASSSSP  420
TERNNKNPGK RFVHLPLKII SSVDMLMEKA DGFLEERTGA EDLDRKSPGT ATSKLVKPLA  480
LCNNVKHPDA VERKDSPSNL DIRSEQAKFP PHHANDDMVG VVNSCRDGSQ VPTGSGHTIP  540
IGGDVYYGSE NKLCDMILAS NRDLANRASD AFSKMLPTTH LRTNISSATD VSLIKKKMVM  600
RKRFIKFKER VITLKFRALQ YPWKEDLRLL SIKRFSAKSQ KKFELSSRMG YADHQKHDSS  660
SHSRLSSAGS LSLVPTTEIV DYVKKLLSDS QIKIYKNTLK MPSFMLDKRE YIASRFISDN  720
GLLENPIDVE KERSIVNPWT IEEKEIFLDK YSLFGKNFRK IASFLEHKTI ADCVEFYYKY  780
HKSDFFQKTK KNKKFANGKS YTANIYLVTS GKRLNRDTNA TSLDMLGAAS ATVANMDDGM  840
QKQHKYTANC YVGSSSDKKL PGGDVGILER SNNFAMSCNE QETAAADVLA GICGSMSSDA  900
LSSCITSSVE PGRRCQKLGG SSLHLTPEGT LDDVDEDTCS DNSCGEDMDP CDWMDEEKSS  960
FMQAVRSYGK DFSMISRYMR TRSTDECRVF FSKARKCLGL DVIHLEAGSE GTTGANQGGG  1020
SDHEDACGSV VSHDKSSSEC NKIDLHSSDI REEHAESDRN GCREPELMLE NLVSHAEKKP  1080
QVELIGESGC SNRNLEGAAD SEATETTNAH QNMYSEGSVE EMNDYSSATG VAKVSAKICR  1140
QGIRESEHPL PSFNGNTSSS VRRLSSCPAE DLNFASHYSR GTCLDLSIDR GNNMELNASS  1200
ENGFLMLNFF PKDPGFGKTL SQDDVSSRRL SFRKSGDQRC SSMDGYHLHL SKRSLLDCEE  1260
SSHILPVSIP SAKEGKNGSL SWHEPQSNFK LEEMDCSVSQ EPRQSCSLER PRRSGDVKLF  1320
GQILTNLSGS NANGSARESS SIGKPNGGRL FNLEFDNDKK NVPPSRSYGF WDGNRIQTLP  1380
DSAMLLAKYP AAFSNTSSSK FDSCSLNQTS D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-108	MYB family protein