PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959161.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 1440aa MW: 157643 Da PI: 6.4883

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	766	809	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE e+++d ++G++ +++Ia+ + ++t +c+++++ky XP_024959161.1 766 NPWTIEEKEIFLDKYSLFGKN-FRKIASFLE-HKTIADCVEFYYKY 809 58***************99.*****.***********9 PP
2	Myb_DNA-binding	23.7	1.1e-07	982	1021	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W eE + +av+ +G++ ++ I+r+m +R+ +c+ ++ XP_024959161.1 982 WMDEEKSSFMQAVRSYGKD-FSMISRYMR-TRSTDECRVFFS 1021 999************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1440 aa Download sequence
MPPEPLPFDR KDFFKARKPS SSDPVGTVPP QWREPPTTPS NHNNRGSSSS CRLAGGGPSD 60 FRQPFSGYDK AVSGGFHVTT VESGSREYKY CKNDNSKENN TNNSRMSVAL GSQKPLKGGN 120 SWATTLSLNG NSYPLTDSVN SWEQLQLNDQ HAKKNGGEVS TTGSQGLDKE DSLDWKPLKW 180 IRSGSLSSRG SGFSHSSSCK IIRLDSLDTK IDAQLGNSTP VQSPSGDVVL CLTPRTPADE 240 VSSRKKPRLG WGEGLAKYEK KKVGPYDIVD KESGARNGMV DGVSCSEPLL SSPSNLLDKS 300 PSLTGCSESA SPTTPYSFAC SSSPGLEEKD GSIKAATVDN GTCNPNVASL HLSQNHTEGL 360 AFNLENLEIT EGFNLSSSLE ELLQSDESGA PGNGFVESTA MDKLQVWKAD ISRTLEITET 420 EIDSLEHELK LLISDGGSCP FPAASSSSPT ERNNKNPGKR FVHLPLKIIS SVDMLMEKAD 480 GFLEERTGAE DLDRKSPGTA TSKLVKPLAL CNNVKHPDAV ERKDSPSNLD IRSEQAKFPP 540 HHANDDMVGV VNSCRDGSQV PTGSGHTIPI GGDVYYGSEN KLCDMILASN RDLANRASDA 600 FSKMLPTTHL RTNISSATDV SLIKKKMVMR KRFIKFKERV ITLKFRALQY PWKEDLRLLS 660 IKRFSAKSQK KFELSSRMGY ADHQKHDSSS HSRLSSAGSL SLVPTTEIVD YVKKLLSDSQ 720 IKIYKNTLKM PSFMLDKREY IASRFISDNG LLENPIDVEK ERSIVNPWTI EEKEIFLDKY 780 SLFGKNFRKI ASFLEHKTIA DCVEFYYKYH KSDFFQKTKK NKKFANGKSY TANIYLVTSG 840 KRLNRDTNAT SLDMLGAASA TVANMDDGMQ KQHKYTANCY VGSSSDKKLP GGDVGILERS 900 NNFAMSCNEQ ETAAADVLAG ICGSMSSDAL SSCITSSVEP GRRCQKLGGS SLHLTPEGTL 960 DDVDEDTCSD NSCGEDMDPC DWMDEEKSSF MQAVRSYGKD FSMISRYMRT RSTDECRVFF 1020 SKARKCLGLD VIHLEAGSEG TTGANQGGGS DHEDACGSVV SHDKSSSECN KIDLHSSDIR 1080 EEHAESDRNG CREPELMLEN LVSHAEKKPQ VELIGESGCS NRNLEGAADS EATETTNAHQ 1140 NMYSEGSVEE MNDYSSATGV AKVSAKICRQ GIRESEHPLP SFNGNTSSSV RRLSSCPAED 1200 LNFASHYSRG TCLDLSIDRG NNMELNASSE NGFLMLNFFP KDPGFGKTLS QDDVSSRRLS 1260 FRKSGDQRCS SMDGYHLHLS KRSLLDCEES SHILPVSIPS AKEGKNGSLS WHEPQSNFKL 1320 EEMDCSVSQE PRQSCSLERP RRSGDVKLFG QILTNLSGSN ANGSARESSS IGKPNGGRLF 1380 NLEFDNDKKN VPPSRSYGFW DGNRIQTLPD SAMLLAKYPA AFSNTSSSKF DSCSLNQTSD

Sequence ? help Back to Top

Protein Sequence Length: 1440 aa Download sequence

MPPEPLPFDR KDFFKARKPS SSDPVGTVPP QWREPPTTPS NHNNRGSSSS CRLAGGGPSD  60
FRQPFSGYDK AVSGGFHVTT VESGSREYKY CKNDNSKENN TNNSRMSVAL GSQKPLKGGN  120
SWATTLSLNG NSYPLTDSVN SWEQLQLNDQ HAKKNGGEVS TTGSQGLDKE DSLDWKPLKW  180
IRSGSLSSRG SGFSHSSSCK IIRLDSLDTK IDAQLGNSTP VQSPSGDVVL CLTPRTPADE  240
VSSRKKPRLG WGEGLAKYEK KKVGPYDIVD KESGARNGMV DGVSCSEPLL SSPSNLLDKS  300
PSLTGCSESA SPTTPYSFAC SSSPGLEEKD GSIKAATVDN GTCNPNVASL HLSQNHTEGL  360
AFNLENLEIT EGFNLSSSLE ELLQSDESGA PGNGFVESTA MDKLQVWKAD ISRTLEITET  420
EIDSLEHELK LLISDGGSCP FPAASSSSPT ERNNKNPGKR FVHLPLKIIS SVDMLMEKAD  480
GFLEERTGAE DLDRKSPGTA TSKLVKPLAL CNNVKHPDAV ERKDSPSNLD IRSEQAKFPP  540
HHANDDMVGV VNSCRDGSQV PTGSGHTIPI GGDVYYGSEN KLCDMILASN RDLANRASDA  600
FSKMLPTTHL RTNISSATDV SLIKKKMVMR KRFIKFKERV ITLKFRALQY PWKEDLRLLS  660
IKRFSAKSQK KFELSSRMGY ADHQKHDSSS HSRLSSAGSL SLVPTTEIVD YVKKLLSDSQ  720
IKIYKNTLKM PSFMLDKREY IASRFISDNG LLENPIDVEK ERSIVNPWTI EEKEIFLDKY  780
SLFGKNFRKI ASFLEHKTIA DCVEFYYKYH KSDFFQKTKK NKKFANGKSY TANIYLVTSG  840
KRLNRDTNAT SLDMLGAASA TVANMDDGMQ KQHKYTANCY VGSSSDKKLP GGDVGILERS  900
NNFAMSCNEQ ETAAADVLAG ICGSMSSDAL SSCITSSVEP GRRCQKLGGS SLHLTPEGTL  960
DDVDEDTCSD NSCGEDMDPC DWMDEEKSSF MQAVRSYGKD FSMISRYMRT RSTDECRVFF  1020
SKARKCLGLD VIHLEAGSEG TTGANQGGGS DHEDACGSVV SHDKSSSECN KIDLHSSDIR  1080
EEHAESDRNG CREPELMLEN LVSHAEKKPQ VELIGESGCS NRNLEGAADS EATETTNAHQ  1140
NMYSEGSVEE MNDYSSATGV AKVSAKICRQ GIRESEHPLP SFNGNTSSSV RRLSSCPAED  1200
LNFASHYSRG TCLDLSIDRG NNMELNASSE NGFLMLNFFP KDPGFGKTLS QDDVSSRRLS  1260
FRKSGDQRCS SMDGYHLHLS KRSLLDCEES SHILPVSIPS AKEGKNGSLS WHEPQSNFKL  1320
EEMDCSVSQE PRQSCSLERP RRSGDVKLFG QILTNLSGSN ANGSARESSS IGKPNGGRLF  1380
NLEFDNDKKN VPPSRSYGFW DGNRIQTLPD SAMLLAKYPA AFSNTSSSKF DSCSLNQTSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-108	MYB family protein