PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 524aa    MW: 59032.4 Da    PI: 8.1327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13350394554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + Er+RR+++N++f+ Lr+llP+       K +Ka++L  + eYI sL
  XP_024959080.1 350 HMISERKRREKLNESFQALRSLLPSG-----SKKDKASVLSNTKEYIASL 394
                     8899*********************5.....499*************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MDSIFNLQET ERSSLLQQMV DSFGCTYVCL WSHFPHPSNC LIFIDGVYKD GNNQASSSSA  60
GSLGMRSFLE YQKSTFLIDN YSGGVHVPGF AFKNNLPYME RKGLELLRLT WNAQQQQFYQ  120
GSRNETVIFM GCKNGEIEIG MSNGTSQIDF EIKLKRLFPG DFPQEMLPQP LDQGRVSSSS  180
SSLRSLSIEN GSEYSPFLFN MLQTTSYIPE TIFAPKEAFL DQQAPNQTPA SSRIRSQDPL  240
QQVLDQIRSS QLMPLRENEE AAMTRAILTA ISSSPSPCSS SSQQLQTPHQ DGSAFKRYRS  300
CLGPTKQRNQ ISRQNLSRRS LTFFRNLSEA RAQQDRMFQT TRPTTSQLHH MISERKRREK  360
LNESFQALRS LLPSGSKKDK ASVLSNTKEY IASLKSQVEE LNKRNKILES GEHSGKLAAV  420
LDQDSGERVT VRIRNVSESS SESRVVELEV HARGNLVLTD LVIRMLEFIK QVEHATVVSV  480
DAGTPSLENG VQANRVVLRL RIQGSEWDES SFQEAVRRIL DDVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359ERKRRE
2355360RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-57bHLH family protein