PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024959080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 524aa MW: 59032.4 Da PI: 8.1327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 350 | 394 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ K +Ka++L + eYI sL XP_024959080.1 350 HMISERKRREKLNESFQALRSLLPSG-----SKKDKASVLSNTKEYIASL 394 8899*********************5.....499*************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence |
MDSIFNLQET ERSSLLQQMV DSFGCTYVCL WSHFPHPSNC LIFIDGVYKD GNNQASSSSA 60 GSLGMRSFLE YQKSTFLIDN YSGGVHVPGF AFKNNLPYME RKGLELLRLT WNAQQQQFYQ 120 GSRNETVIFM GCKNGEIEIG MSNGTSQIDF EIKLKRLFPG DFPQEMLPQP LDQGRVSSSS 180 SSLRSLSIEN GSEYSPFLFN MLQTTSYIPE TIFAPKEAFL DQQAPNQTPA SSRIRSQDPL 240 QQVLDQIRSS QLMPLRENEE AAMTRAILTA ISSSPSPCSS SSQQLQTPHQ DGSAFKRYRS 300 CLGPTKQRNQ ISRQNLSRRS LTFFRNLSEA RAQQDRMFQT TRPTTSQLHH MISERKRREK 360 LNESFQALRS LLPSGSKKDK ASVLSNTKEY IASLKSQVEE LNKRNKILES GEHSGKLAAV 420 LDQDSGERVT VRIRNVSESS SESRVVELEV HARGNLVLTD LVIRMLEFIK QVEHATVVSV 480 DAGTPSLENG VQANRVVLRL RIQGSEWDES SFQEAVRRIL DDVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 354 | 359 | ERKRRE |
2 | 355 | 360 | RKRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-57 | bHLH family protein |