PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959010.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 827aa MW: 95318.2 Da PI: 9.2558

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	7.9e-22	170	265	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA +vGF+vr +++k++ +n+ i +r+fvC++eg+++++ + e++ r+++ +r+gC a++k++++k ++ +e++++++ HnH+ XP_024959010.1 170 KMYRAYADNVGFDVRLHAKKTN-KNEDIQTRWFVCNREGTPNKKFFDsmdiqsGERRYRNTNLKRCGCLACIKIHLKKdKSGYEIYEFVEAHNHA 263 68************998887.6666**********999888899987778888999***********98999*********** PP FAR1 89 la 90 l+ XP_024959010.1 264 LF 265 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence
MIGDQQAGVQ TRRGAGCKVD RKSTTGSCQL LGGKLVSWTS KKQHSVSTST VEAEYVAAGS 60 CCSQILWMKN QLADYDQLFA EIPIFCDNSS AIAIANNPVL HSRTKHIDIR YHYIRYHVMK 120 GVPILTISEH EPEYAVEECS QGNQFFIPKV DDELKPKINS HFLTINDAEK MYRAYADNVG 180 FDVRLHAKKT NKNEDIQTRW FVCNREGTPN KKFFDSMDIQ SGERRYRNTN LKRCGCLACI 240 KIHLKKDKSG YEIYEFVEAH NHALFNTNDR RFSRKNRQMK YTDFKNVLNS SSYKVGAIRA 300 HRIQTTLNGG FEHNRCSEID FKNFKRDVVA CVGKKDTKML INKLSNRRDI VPGYFSSTSA 360 MIRSWVPFSG QMRPLELTTK SLGMHAMIFV SFLAVDNHKA SVVVGSALIN GETIENFTWV 420 LRAFLKCHEK QPVFVITNQC SAMKQVVPLV FTEAKHRLCM WHIMKKVPSK VSVALNQDRL 480 FNKVINKLVW NINIGPSEFE TKWQEMIEQY NLVGDLWFIE MYEICASWIP AYYKDTPMSG 540 LMKTTSRSES SNSYINIYES YWFDLVQFLN NYDVAIEKQR YKQVVHEIIT MTTYPKLVTP 600 LRLESQAARV YSRNVFFDIQ KELKKAVWFC GIETVECRGD LKTFIISHKN KXXFVXTTYL 660 VSXNYPANTV ECECNLFTRN GYLCRHAFKI QSARVRYXXV DAEKDKSIID VYSKVDBIIS 720 IARNDKSILX RLEQNLDNFM VDIEKEVPYE DPSQQKLDAI RDHLGVSIPD DVDILPPSGI 780 RNKGCGTGKR LVSVYEKIQS VSKKTRRKCA TCGQRTRHDS RNCPELK

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence

MIGDQQAGVQ TRRGAGCKVD RKSTTGSCQL LGGKLVSWTS KKQHSVSTST VEAEYVAAGS  60
CCSQILWMKN QLADYDQLFA EIPIFCDNSS AIAIANNPVL HSRTKHIDIR YHYIRYHVMK  120
GVPILTISEH EPEYAVEECS QGNQFFIPKV DDELKPKINS HFLTINDAEK MYRAYADNVG  180
FDVRLHAKKT NKNEDIQTRW FVCNREGTPN KKFFDSMDIQ SGERRYRNTN LKRCGCLACI  240
KIHLKKDKSG YEIYEFVEAH NHALFNTNDR RFSRKNRQMK YTDFKNVLNS SSYKVGAIRA  300
HRIQTTLNGG FEHNRCSEID FKNFKRDVVA CVGKKDTKML INKLSNRRDI VPGYFSSTSA  360
MIRSWVPFSG QMRPLELTTK SLGMHAMIFV SFLAVDNHKA SVVVGSALIN GETIENFTWV  420
LRAFLKCHEK QPVFVITNQC SAMKQVVPLV FTEAKHRLCM WHIMKKVPSK VSVALNQDRL  480
FNKVINKLVW NINIGPSEFE TKWQEMIEQY NLVGDLWFIE MYEICASWIP AYYKDTPMSG  540
LMKTTSRSES SNSYINIYES YWFDLVQFLN NYDVAIEKQR YKQVVHEIIT MTTYPKLVTP  600
LRLESQAARV YSRNVFFDIQ KELKKAVWFC GIETVECRGD LKTFIISHKN KXXFVXTTYL  660
VSXNYPANTV ECECNLFTRN GYLCRHAFKI QSARVRYXXV DAEKDKSIID VYSKVDBIIS  720
IARNDKSILX RLEQNLDNFM VDIEKEVPYE DPSQQKLDAI RDHLGVSIPD DVDILPPSGI  780
RNKGCGTGKR LVSVYEKIQS VSKKTRRKCA TCGQRTRHDS RNCPELK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-44	FAR1 family protein