PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024958987.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 715aa MW: 83389.4 Da PI: 8.7902

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024958987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	60	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++Y ++GF+vr++++k++ ++g i +r+fvCskeg++++++ + +e++ r+++ +r+gC+a+lk++++k g +e+++++ HnH+ XP_024958987.1 60 KMYRAYVDKAGFDVRVHAKKTN-KHGDIQNRWFVCSKEGNPNKRQFNsleiqpSERRYRNTNLKRCGCNACLKIHLTKdGGCYEIYEFVDAHNHS 153 68************998887.6677**************99999999999***************9899************ PP FAR1 89 la 90 l+ XP_024958987.1 154 LF 155 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MTVVDMLNIV GFYDLTPPHP EFDYDIGESS ERSKYFIPIV DDALKPKTNA QYASLNDAEK 60 MYRAYVDKAG FDVRVHAKKT NKHGDIQNRW FVCSKEGNPN KRQFNSLEIQ PSERRYRNTN 120 LKRCGCNACL KIHLTKDGGC YEIYEFVDAH NHSLFNVNDR RFSRKNIQMK YTNFETVLNS 180 SSYKVDARRT HRIQTSLNGG FEHTRVSEVD FKNFKRDVVA CVENKDAKML INKLSNRRDI 240 VPGYFFEYKC NEQELIAIFW ADEVVRINYK EFGDVISFDG TFRTNKHAMI FVPFLAVDNH 300 KASVVVGSAL ISGETIKNFT WVLKAFLKCH EKQPVFVITD QCSAMKQAIP MVFTEAKHRL 360 LVVIYTQVSV VLNQDPIFNK VINKLVWNIH IGPAEFERRW HEMIDQYNLG GDPWFTEMYA 420 IRHLWIPAFY KDTPMSEKQR YRKYVHETVT RTTNPKFVTP LHLESYASRI YSRNVFFDIQ 480 KEIKKAVWFC AIETVECRDD LKSFVISHKT KKSSETITYL VNRNYSTDTI ECECHLFTRN 540 GYLCRHAFKV LINDEVEFIP DRYVLRRWKR QLVPVQIQSA RVRYDVVDAE KDKCIVDVYS 600 KVDEIISITR NDKSILARLE RNLDKFIVDI EKEVPYEDPS QQKLDAIREH LGVSIPDEVD 660 ILPPSGIRNK GCDTGKRLVS VSEKIQTNSK KAKRKCAICG QRSGHDSRNC PELLD

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MTVVDMLNIV GFYDLTPPHP EFDYDIGESS ERSKYFIPIV DDALKPKTNA QYASLNDAEK  60
MYRAYVDKAG FDVRVHAKKT NKHGDIQNRW FVCSKEGNPN KRQFNSLEIQ PSERRYRNTN  120
LKRCGCNACL KIHLTKDGGC YEIYEFVDAH NHSLFNVNDR RFSRKNIQMK YTNFETVLNS  180
SSYKVDARRT HRIQTSLNGG FEHTRVSEVD FKNFKRDVVA CVENKDAKML INKLSNRRDI  240
VPGYFFEYKC NEQELIAIFW ADEVVRINYK EFGDVISFDG TFRTNKHAMI FVPFLAVDNH  300
KASVVVGSAL ISGETIKNFT WVLKAFLKCH EKQPVFVITD QCSAMKQAIP MVFTEAKHRL  360
LVVIYTQVSV VLNQDPIFNK VINKLVWNIH IGPAEFERRW HEMIDQYNLG GDPWFTEMYA  420
IRHLWIPAFY KDTPMSEKQR YRKYVHETVT RTTNPKFVTP LHLESYASRI YSRNVFFDIQ  480
KEIKKAVWFC AIETVECRDD LKSFVISHKT KKSSETITYL VNRNYSTDTI ECECHLFTRN  540
GYLCRHAFKV LINDEVEFIP DRYVLRRWKR QLVPVQIQSA RVRYDVVDAE KDKCIVDVYS  600
KVDEIISITR NDKSILARLE RNLDKFIVDI EKEVPYEDPS QQKLDAIREH LGVSIPDEVD  660
ILPPSGIRNK GCDTGKRLVS VSEKIQTNSK KAKRKCAICG QRSGHDSRNC PELLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-56	FAR1 family protein