PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024958986.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 766aa MW: 89343 Da PI: 7.3512

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024958986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.3e-18	135	229	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y++YA+++GF+vr+s++k + +g i ++ fvCs+ g + +++ + +++e r+++ +rtgC a++k +++k + ++e + +e++HnH+l XP_024958986.1 135 IYQKYAETAGFEVRRSTQKIN-PDGVIQNKYFVCSRFGLPLKKSFDsmvcrkHQREVRNSNIKRTGCIASVKFRLMKgTTTYECYGFEEDHNHSL 228 6*************98887.9999**********999998999998899999***************9*************99 PP FAR1 90 a 90 XP_024958986.1 229 L 229 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MKNNGKNSID SSIQVNSDED SVYVNYHEEN VDVMEVVTWE ANEEFDVGLS PFKDVQKNCE 60 EIDLVDDIET HVIDDTTGYT SNNEIQNDEN PVIDQAEQGL SISPGGTNWY TPVVEEVIKP 120 IIGSVYLSLD VAESIYQKYA ETAGFEVRRS TQKINPDGVI QNKYFVCSRF GLPLKKSFDS 180 MVCRKHQREV RNSNIKRTGC IASVKFRLMK GTTTYECYGF EEDHNHSLLR HKDMDLTRKG 240 RQMKFSDQRF VHDAGISNMG ATRAHKLHTS LRGGYEYGGP TVVDYQNYKR DCDNFFGRGD 300 AKVLVDLMTK KRDADHNFFF EYNCVGSKLH TIFWVEVARF NYSEFGDVIS FDATFRTNRH 360 SMVFVPFTAV DNYNCNVVVG SVLVRHEHVS NYKWLLQAFR KAHSKPPMMI LTDQCPAMKQ 420 AIASVFPDSR HSLCIWHIVN KVPNKLSYDI LNNTTFKKQF FKLVWNIHIS XDEFESRWMV 480 LIEEFSLQDH PWLKDMFALR SQWIPAYFKE LPMCCLIKTT SRSQSANSFF NSFSKSGNNL 540 FQFMLGFEFA LEKQRQEQRR LDYHTRTTLP KWLTYSQLER HACEIYTCSV FFKVQTEIHR 600 TAWTCSIKSV NLNEEVETYL IEHLDKRDEK IAEYKVVRNL KESTVVCNCN HVGRHGYLCR 660 RVQSFAKHRR QRICDVGEDQ RRIINDTYEI VNDVLDILRD DKEKLESFVA TLKEMRDDVA 720 KDRTYEPSMK RKERGIEQIL GFTRPDNIEI HPAIGIKTKV VVRRKD

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MKNNGKNSID SSIQVNSDED SVYVNYHEEN VDVMEVVTWE ANEEFDVGLS PFKDVQKNCE  60
EIDLVDDIET HVIDDTTGYT SNNEIQNDEN PVIDQAEQGL SISPGGTNWY TPVVEEVIKP  120
IIGSVYLSLD VAESIYQKYA ETAGFEVRRS TQKINPDGVI QNKYFVCSRF GLPLKKSFDS  180
MVCRKHQREV RNSNIKRTGC IASVKFRLMK GTTTYECYGF EEDHNHSLLR HKDMDLTRKG  240
RQMKFSDQRF VHDAGISNMG ATRAHKLHTS LRGGYEYGGP TVVDYQNYKR DCDNFFGRGD  300
AKVLVDLMTK KRDADHNFFF EYNCVGSKLH TIFWVEVARF NYSEFGDVIS FDATFRTNRH  360
SMVFVPFTAV DNYNCNVVVG SVLVRHEHVS NYKWLLQAFR KAHSKPPMMI LTDQCPAMKQ  420
AIASVFPDSR HSLCIWHIVN KVPNKLSYDI LNNTTFKKQF FKLVWNIHIS XDEFESRWMV  480
LIEEFSLQDH PWLKDMFALR SQWIPAYFKE LPMCCLIKTT SRSQSANSFF NSFSKSGNNL  540
FQFMLGFEFA LEKQRQEQRR LDYHTRTTLP KWLTYSQLER HACEIYTCSV FFKVQTEIHR  600
TAWTCSIKSV NLNEEVETYL IEHLDKRDEK IAEYKVVRNL KESTVVCNCN HVGRHGYLCR  660
RVQSFAKHRR QRICDVGEDQ RRIINDTYEI VNDVLDILRD DKEKLESFVA TLKEMRDDVA  720
KDRTYEPSMK RKERGIEQIL GFTRPDNIEI HPAIGIKTKV VVRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-67	FAR1 family protein