PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024958896.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 620aa MW: 70853.7 Da PI: 8.6833

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024958896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	161	256	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+++GF+vr +++k++ +ng i +r+fvC++eg++ ++ + e++ r+++ +r+gC a++kv+++k ++ +e++++++ HnH+ XP_024958896.1 161 KMYRAYANNAGFDVRLHAKKTN-KNGDIQTRWFVCNREGTPYKQFFDsmdmqsGERRYRNTNLKRCGCLACIKVHLKKdKSGYEIYEFVEAHNHA 254 68***********9987777.7888*********9998777788877777888999***********98999*********** PP FAR1 89 la 90 l+ XP_024958896.1 255 LF 256 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MDRCASHGPA CIAMLEGLVT TLGPTRLGMA CLVSSCGTRH RAFLAWLDPA CLGLACLLAS 60 CGHKAPGVHV LPRHGMLGSV MRAQGTGRAL LGLAGFIHLL VCSHVHIIIS AGVPILAISE 120 HEPEYAVEES SQGNQFFIPK VDDDIKPNIN SQFLTINEAE KMYRAYANNA GFDVRLHAKK 180 TNKNGDIQTR WFVCNREGTP YKQFFDSMDM QSGERRYRNT NLKRCGCLAC IKVHLKKDKS 240 GYEIYEFVEA HNHALFNTND RRFSRKNRQM KYTDYKNVLN SSSYKVGAIR AHRIQTALNG 300 GFEHNRCSEI DFKNFKRDAV ACVDKKDAKM LINKLSNRRD XVPDYFFEYK CNDQELGAIF 360 WADEVARLNY REFGDVISFD GTFRTNKHAM IFVPFLAVDN HKASVVVGSA LISGETIENF 420 TWVLRAFLKC HEKQPVFVIT DQCSAMKQAV PLVFTEAKHR LCMWHIMKKV PSKISVALNQ 480 DPLFNKIINK LVWNVNIGPS EFETQWQEMI EQYNLGGDPW FTEMYEIRAS WIPAFYKDTP 540 MSGLMXTTSR SESSNSYINI YESYWFDLVQ FLNNYDFAIE KQRYKQAGHE TITRTTNPKL 600 CTPLRLESQA SRYRDWRMSG

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MDRCASHGPA CIAMLEGLVT TLGPTRLGMA CLVSSCGTRH RAFLAWLDPA CLGLACLLAS  60
CGHKAPGVHV LPRHGMLGSV MRAQGTGRAL LGLAGFIHLL VCSHVHIIIS AGVPILAISE  120
HEPEYAVEES SQGNQFFIPK VDDDIKPNIN SQFLTINEAE KMYRAYANNA GFDVRLHAKK  180
TNKNGDIQTR WFVCNREGTP YKQFFDSMDM QSGERRYRNT NLKRCGCLAC IKVHLKKDKS  240
GYEIYEFVEA HNHALFNTND RRFSRKNRQM KYTDYKNVLN SSSYKVGAIR AHRIQTALNG  300
GFEHNRCSEI DFKNFKRDAV ACVDKKDAKM LINKLSNRRD XVPDYFFEYK CNDQELGAIF  360
WADEVARLNY REFGDVISFD GTFRTNKHAM IFVPFLAVDN HKASVVVGSA LISGETIENF  420
TWVLRAFLKC HEKQPVFVIT DQCSAMKQAV PLVFTEAKHR LCMWHIMKKV PSKISVALNQ  480
DPLFNKIINK LVWNVNIGPS EFETQWQEMI EQYNLGGDPW FTEMYEIRAS WIPAFYKDTP  540
MSGLMXTTSR SESSNSYINI YESYWFDLVQ FLNNYDFAIE KQRYKQAGHE TITRTTNPKL  600
CTPLRLESQA SRYRDWRMSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-56	FAR1 family protein