PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024958877.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 697aa MW: 80915.4 Da PI: 9.4076

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024958877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.5	1.7e-21	1	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA ++GF+vr +++k++ +ng i +r+fvC+keg+++++ + e++ r+++ +r+gC a++k++++k ++ +e++++++ HnH+l+ XP_024958877.1 1 MYRAYADNAGFDVRLHAKKTN-KNGVIQTRWFVCNKEGTPNKKFFDsmdiqfGERRYRNTNLKRCGCLACIKIHLKKdKSGYEIYEFVEAHNHALF 95 6***********9987776.9999***********99888899999899999**************98999***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MYRAYADNAG FDVRLHAKKT NKNGVIQTRW FVCNKEGTPN KKFFDSMDIQ FGERRYRNTN 60 LKRCGCLACI KIHLKKDKSG YEIYEFVEAH NHALFNTNDR RFSRKNRQMK YTDFKNVLNS 120 SSYKVGAIRA HRIQTALNGG FEHNRCSEID FKNFKRDAVA CVGKKDAKML INKLSNRRDI 180 VPGYFFEYKC NDQELGAIFW ADEIARVNYK EFGDVISFDG TFRTNKHAMI FVPFLAVDNH 240 KASVVVGSAL ISGETIENFT WVLRAFLKCH EKQPVFVITD QCSAMKQVVP LVFTEAKHRL 300 CMWHIMKKVP SKVSVALNQD PLFNKVINKL VWNINIGPSE FETKWQEMIE QYNLGGDQWF 360 TEMYEIRASW IPAYYKDTPM SGLMKTTSRS ESSNSYINIY ESYXFDLVQF LNNYDVAIEK 420 QRYKQAVHET ITRTTYPKLV TPLRLESQAA RVYSRNVFFD IQKELKKAVW FCGIETVECR 480 GDLKTFIISH KNKMKFVNTT YLVSRNYPAN TVECECNLFT RNGYLCRHAF KVLINEEVES 540 IPNQYVLHRW KQNLVPVQIQ SARVRYGEVD AEKDKSIIDV YSKVDNIISI ARNDKSILNR 600 LEQNLDNFMV DIEKEVPYED PSQQKLDAIR DHLGVSIPDD VDILPPSGIR NKDCGTGKRL 660 VSVSEKIQSG SKKIRRKCAT RGQRTGHDSR NCPELIE

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MYRAYADNAG FDVRLHAKKT NKNGVIQTRW FVCNKEGTPN KKFFDSMDIQ FGERRYRNTN  60
LKRCGCLACI KIHLKKDKSG YEIYEFVEAH NHALFNTNDR RFSRKNRQMK YTDFKNVLNS  120
SSYKVGAIRA HRIQTALNGG FEHNRCSEID FKNFKRDAVA CVGKKDAKML INKLSNRRDI  180
VPGYFFEYKC NDQELGAIFW ADEIARVNYK EFGDVISFDG TFRTNKHAMI FVPFLAVDNH  240
KASVVVGSAL ISGETIENFT WVLRAFLKCH EKQPVFVITD QCSAMKQVVP LVFTEAKHRL  300
CMWHIMKKVP SKVSVALNQD PLFNKVINKL VWNINIGPSE FETKWQEMIE QYNLGGDQWF  360
TEMYEIRASW IPAYYKDTPM SGLMKTTSRS ESSNSYINIY ESYXFDLVQF LNNYDVAIEK  420
QRYKQAVHET ITRTTYPKLV TPLRLESQAA RVYSRNVFFD IQKELKKAVW FCGIETVECR  480
GDLKTFIISH KNKMKFVNTT YLVSRNYPAN TVECECNLFT RNGYLCRHAF KVLINEEVES  540
IPNQYVLHRW KQNLVPVQIQ SARVRYGEVD AEKDKSIIDV YSKVDNIISI ARNDKSILNR  600
LEQNLDNFMV DIEKEVPYED PSQQKLDAIR DHLGVSIPDD VDILPPSGIR NKDCGTGKRL  660
VSVSEKIQSG SKKIRRKCAT RGQRTGHDSR NCPELIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-70	FAR1 family protein