PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024958863.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 468aa    MW: 53503.6 Da    PI: 7.1435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024958863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.52.2e-113714671373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar....svselykalppsetsekn....sseelaalkl...f 84 
                     l++lL +cA+ +s++d+++a+++ + ls ++sp+gd+ +Rl++ ft+AL+ r+       ++   k  + s++s++n     ++++        +
  XP_024958863.1  71 LRQLLSSCAQSISNSDFAAAHRITTILSSNSSPYGDSSERLIHSFTKALSLRIRLhlnlPTPFPIKVNNFSNNSSSNyhdqNDDAILQS-SylsL 164
                     689************************************************99762211122223333333333333545433333222.2357* PP

            GRAS  85 sevsPilkfshltaNqaIleavege.............ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                     ++++P+++fs+ltaNqaIlea+++              + +Hi+Dfdi++G+QWp+L+qa+a+R + pp+lRiT+ g     + + l++tg+rL+
  XP_024958863.1 165 NQITPFIRFSQLTANQAILEAIDQPqpqnhsftsspqpHDIHILDFDIMHGVQWPPLMQAIADR-HHPPTLRITATGT----NLDILRRTGDRLS 254
                     **********************9876777778878888889***********************.567**********....99*********** PP

            GRAS 167 kfAeelgvpfefnvl.......vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                     kfA++lg++f+f +l        +++++d+  +l++  + p+E laVn+vl lhrll ++ +l      +L+ +k ++Pkvv+++e+ea+hn++ 
  XP_024958863.1 255 KFAHSLGLRFRFFPLllpdqtnNHHTVDDVinHLSAVLLLPNEILAVNCVLYLHRLLIDRDKLCL----LLRKIKAMNPKVVTLAEREANHNHPL 345
                     **************998887654445555544445555667****************66555555....************************** PP

            GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                     Fl rf eal+yy+a+fdslea+lp++s+er+ vE++++grei ++v++eg++rrerhe++ +W+++++ aGF++v+ls +a +qaklllr ++ s
  XP_024958863.1 346 FLSRFEEALSYYTAIFDSLEATLPPNSRERMEVEQVWFGREIADIVTAEGEKRRERHERFLSWEMMMRIAGFRNVALSPFALSQAKLLLRLHYpS 440
                     *********************************************************************************************** PP

            GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                     +gy++e  ++s++lgW+++pL+svS+W
  XP_024958863.1 441 EGYNLEVVNDSFFLGWQNKPLFSVSSW 467
                     *************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MLGSSSCSQH HHQEQQQQQE VHLQTDPSPP PPPPPPGTAG QLHHHQIQQH QHQEVEMVSR  60
LSSYTPPSIY LRQLLSSCAQ SISNSDFAAA HRITTILSSN SSPYGDSSER LIHSFTKALS  120
LRIRLHLNLP TPFPIKVNNF SNNSSSNYHD QNDDAILQSS YLSLNQITPF IRFSQLTANQ  180
AILEAIDQPQ PQNHSFTSSP QPHDIHILDF DIMHGVQWPP LMQAIADRHH PPTLRITATG  240
TNLDILRRTG DRLSKFAHSL GLRFRFFPLL LPDQTNNHHT VDDVINHLSA VLLLPNEILA  300
VNCVLYLHRL LIDRDKLCLL LRKIKAMNPK VVTLAEREAN HNHPLFLSRF EEALSYYTAI  360
FDSLEATLPP NSRERMEVEQ VWFGREIADI VTAEGEKRRE RHERFLSWEM MMRIAGFRNV  420
ALSPFALSQA KLLLRLHYPS EGYNLEVVND SFFLGWQNKP LFSVSSWY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-112GRAS family protein