PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024958828.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 545aa MW: 62942.9 Da PI: 5.8316

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024958828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.1	8e-12	100	149	2	56
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 W+++ev +L++++++ e+++ + W++vs+k++e g++rs+++Ckek+e+ XP_024958828.1 100 WSNDEVIQLLRIKSSSENWFHDF-----TWDHVSRKLAEMGYKRSAEKCKEKFEE 149 ******************998.....9**********************96 PP
2	trihelix	90.4	1.9e-28	410	511	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rW+++evlaLi++r+++++ ++ ++ + lWe++s+ m e g+ rs+k+Ckekwen+nk+++k+k+ +kkr s +s+t XP_024958828.1 410 RWPRDEVLALINIRSNVNNGIGGNSeehqgligynksgggggGGGSLWERISQGMLELGYIRSAKRCKEKWENINKYFRKTKDANKKR-SLDSRT 503 8************99999996655678888889999999899***************************************8.9999 PP trihelix 79 cpyfdqle 86 cpy++ql XP_024958828.1 504 CPYYHQLS 511 ******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MFDGVPVEQF HQFISTPSSR IPSNSSSLIQ TPPISTSTNL NFLSFDPLLF PPPLPTHQSL 60 FQAQHFLRTP TRDQFNGTHD DATGKLDQEI DLGIDINDSW SNDEVIQLLR IKSSSENWFH 120 DFTWDHVSRK LAEMGYKRSA EKCKEKFEEE TCRSFSSTIG YNKNSSRYLI SEELDEHLYN 180 PHHDHQNTHH VPIDQTPHEE TVDDHQDQPP QVALDGQKIG DDDDQNHEAQ GQKGHFEKDP 240 DEIMVQTADE DDTVVGVNKS KKRKRKHKKF KMVKGLCVDM VQKMMAQQEE MHKRLLEDMA 300 NREKEKIERE EAWRKEEIER VKVEIHIREH EQEMARDRQS TITEFLNKIT SFDQKIQLPL 360 DINLQDLQTN VTHIDKPIPF YEITEIPSSE KITEDHNQDK PTTKDDIGKR WPRDEVLALI 420 NIRSNVNNGI GGNSEEHQGL IGYNKSGGGG GGGGSLWERI SQGMLELGYI RSAKRCKEKW 480 ENINKYFRKT KDANKKRSLD SRTCPYYHQL SKLYNQEKQV SSSHSAGLSS DEPEKCPTTE 540 IMPEN

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MFDGVPVEQF HQFISTPSSR IPSNSSSLIQ TPPISTSTNL NFLSFDPLLF PPPLPTHQSL  60
FQAQHFLRTP TRDQFNGTHD DATGKLDQEI DLGIDINDSW SNDEVIQLLR IKSSSENWFH  120
DFTWDHVSRK LAEMGYKRSA EKCKEKFEEE TCRSFSSTIG YNKNSSRYLI SEELDEHLYN  180
PHHDHQNTHH VPIDQTPHEE TVDDHQDQPP QVALDGQKIG DDDDQNHEAQ GQKGHFEKDP  240
DEIMVQTADE DDTVVGVNKS KKRKRKHKKF KMVKGLCVDM VQKMMAQQEE MHKRLLEDMA  300
NREKEKIERE EAWRKEEIER VKVEIHIREH EQEMARDRQS TITEFLNKIT SFDQKIQLPL  360
DINLQDLQTN VTHIDKPIPF YEITEIPSSE KITEDHNQDK PTTKDDIGKR WPRDEVLALI  420
NIRSNVNNGI GGNSEEHQGL IGYNKSGGGG GGGGSLWERI SQGMLELGYI RSAKRCKEKW  480
ENINKYFRKT KDANKKRSLD SRTCPYYHQL SKLYNQEKQV SSSHSAGLSS DEPEKCPTTE  540
IMPEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	266	KKRKRK
2	261	269	KKRKRKHKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	8e-57	Trihelix family protein