PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024958732.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 729aa    MW: 80512.1 Da    PI: 6.1126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024958732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.43e-973657282374
            GRAS   2 velLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++L+++A++++sg++  laq +Larl+++ sp g+p+ R+a+yf+eAL+  +++ v+++  +++p  ++  + + ++ a+k fse+sP+++f++
  XP_024958732.1 365 IDQLFKAADMIQSGNNPiLAQGILARLNHQLSPIGKPFDRAAFYFKEALQLLVHSLVNNMNPQITPIGSP-FSLIFKIGAYKSFSEISPFVQFAN 458
                     689**********888769************************************777777777666664.569********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +t+Nqa+le ++g ++vHiiDfd+++G QW++L+q+La R++    s++iT+++sp+++++ el+ t+e+L +fA+e++v f+f+++  + l++ 
  XP_024958732.1 459 FTCNQALLEILDGYDQVHIIDFDLGYGDQWASLMQELALRTNTNGvSIKITAFASPTTHDHLELSLTRENLVNFANEINVGFDFEIVNIDVLASA 553
                     *****************************************66555****************************************755555554 PP

            GRAS 190 eleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                       ++L  +v+ +Ea+aVnl  + ++ +      +   + vL++vk+l Pk+vv v++ +++++ +F +++++al+ ys l++sl+a    + +  
  XP_024958732.1 554 -SWSLpfHVSDNEAIAVNLPTSAFSNY------QILLPLVLRFVKDLAPKIVVSVDRGSERTDLPFPNHLIHALQSYSNLLESLDAV-NMNLNVL 640
                     .6666458888**********888877......444578*********************************************776.4566999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+Er+l++++i++ ++ + +      e+ ++Wr+++ ++GF+p+++s+++++qa +++++++++g+++e ++ slvl+W++r+Lvs+SaWr
  XP_024958732.1 641 QKIERFLIQPSIEKSITGRYSY----PEKTQHWRAQFLSSGFSPLTFSNFTESQAVCMIKRTPVRGFHIERRQSSLVLCWQRRELVSASAWR 728
                     *****************99998....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MKGMPLPFEF ERKGAVALRQ PATAELVVPC ANKVERFEDL GNKKRKYIEP KSVLDNINSS  60
PSPPTSTSTL SSSLGGGGGG GGGETVGLVA VSGNPSLKWP PPENQETSSS NVGVFGTHQP  120
LLLPKQSLDI TAGGGCGDQK CSEMEDWESV LSESGQEQSI LRWIMGDVED PSMGLNKMLH  180
GGGTADEEHN GGFGFVDQGY AGFDPGNPIG QIGNFYQVKE KTGFSSNPPP PPPSQAEMFG  240
DHHHNHKLSD LQNPIFSQLN PSQIHPFDVK PQIFNPQSVI NQNQSQSPQN PTFFLPLEQQ  300
LLMPPQPKRH NPGIIQSNFQ IPKTPFLDSP PNPQNPLQLL QQKPSSIKKM SAIDELGQQQ  360
QQSIIDQLFK AADMIQSGNN PILAQGILAR LNHQLSPIGK PFDRAAFYFK EALQLLVHSL  420
VNNMNPQITP IGSPFSLIFK IGAYKSFSEI SPFVQFANFT CNQALLEILD GYDQVHIIDF  480
DLGYGDQWAS LMQELALRTN TNGVSIKITA FASPTTHDHL ELSLTRENLV NFANEINVGF  540
DFEIVNIDVL ASASWSLPFH VSDNEAIAVN LPTSAFSNYQ ILLPLVLRFV KDLAPKIVVS  600
VDRGSERTDL PFPNHLIHAL QSYSNLLESL DAVNMNLNVL QKIERFLIQP SIEKSITGRY  660
SYPEKTQHWR AQFLSSGFSP LTFSNFTESQ AVCMIKRTPV RGFHIERRQS SLVLCWQRRE  720
LVSASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-144GRAS family protein