PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU30860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 122aa MW: 13491.5 Da PI: 9.8245 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.2 | 2.1e-08 | 1 | 22 | 21 | 42 |
HHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 21 lKKAeELSvLCdaevaviifss 42 +KKA+EL LC++e+a +i+s+ PHU30860.1 1 MKKAHELNALCGVEIAAVIYSP 22 8*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence |
MKKAHELNAL CGVEIAAVIY SPYSNGPVVF PHYEDTLNTF RKFKSLPTLV QSKSVVTREE 60 FTKVKEITNT NTKHEVLKEK VLPIDREGST SNASQAVVGP VVPGWTRSEG PTLRWKGILV 120 GP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 8e-13 | M-type_MADS family protein |