PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30759.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 489aa MW: 51099.3 Da PI: 8.2556

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.1	1.1e-11	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ PHU30759.1 52 EPDCIYYLRTGFCGYGGRCRFNHPR 76 799********************96 PP
2	zf-CCCH	33.7	6.2e-11	97	122	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG Ck+G++Ck++H++ PHU30759.1 97 GQPVCQYYVRTGMCKFGASCKYHHPR 122 5789********************96 PP
3	zf-CCCH	35.9	1.3e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ PHU30759.1 143 GEKECSYYVKTGQCKFGVTCKFNHPQ 168 7899********************97 PP
4	zf-CCCH	35.6	1.6e-11	316	339	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++++G CkyG++C+++H+p PHU30759.1 316 QECQYYMKYGDCKYGSSCRYHHPP 339 58********************97 PP
5	zf-CCCH	35.6	1.5e-11	361	385	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++fa++G Ck+G++CkF H++ PHU30759.1 361 APICSHFAQNGVCKFGPSCKFDHPM 385 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MDRYSGTQAM EGAPVDPVSE WTVPGGETGL EEPMWQLSVG TGPEAYPERP NEPDCIYYLR 60 TGFCGYGGRC RFNHPRDRTS VLGAMRATGG EYPERMGQPV CQYYVRTGMC KFGASCKYHH 120 PRQGGGSPAP VTVNVYGYPL RPGEKECSYY VKTGQCKFGV TCKFNHPQPA GAQVPAPAAG 180 PGPLTAPAAV PAPHIYPPVQ SPSVQSAQQY GVVSGNWPVA RPTLLPGSYI PGTYGSMLLP 240 PGMVPLPGWS PYPAPVSPVP SPSTQLPAAA GPIYGLSQLS PSAPAYTGPY LSVPSSAGPS 300 SSSQKEPAFP ERPGLQECQY YMKYGDCKYG SSCRYHHPPE WSGPKTSFIL SAMGLPLRPG 360 APICSHFAQN GVCKFGPSCK FDHPMGMSYS SSSSSLADMA VAPYPVGSAV GTLAPSSSSS 420 DLRPELVSGS GRDGFSTQLS SMSSASGSVG SMFSKGSPSH SGAQKSVQSS NPSSSSSSAG 480 HGSEGRTSN

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MDRYSGTQAM EGAPVDPVSE WTVPGGETGL EEPMWQLSVG TGPEAYPERP NEPDCIYYLR  60
TGFCGYGGRC RFNHPRDRTS VLGAMRATGG EYPERMGQPV CQYYVRTGMC KFGASCKYHH  120
PRQGGGSPAP VTVNVYGYPL RPGEKECSYY VKTGQCKFGV TCKFNHPQPA GAQVPAPAAG  180
PGPLTAPAAV PAPHIYPPVQ SPSVQSAQQY GVVSGNWPVA RPTLLPGSYI PGTYGSMLLP  240
PGMVPLPGWS PYPAPVSPVP SPSTQLPAAA GPIYGLSQLS PSAPAYTGPY LSVPSSAGPS  300
SSSQKEPAFP ERPGLQECQY YMKYGDCKYG SSCRYHHPPE WSGPKTSFIL SAMGLPLRPG  360
APICSHFAQN GVCKFGPSCK FDHPMGMSYS SSSSSLADMA VAPYPVGSAV GTLAPSSSSS  420
DLRPELVSGS GRDGFSTQLS SMSSASGSVG SMFSKGSPSH SGAQKSVQSS NPSSSSSSAG  480
HGSEGRTSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-124	C3H family protein