PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU30451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 245aa MW: 26896.7 Da PI: 8.7319 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1.1e-06 | 157 | 178 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f C++Gd+C+FaH++ PHU30451.1 157 CSRFNTAEGCRFGDKCHFAHSE 178 99999999************95 PP | |||||||
2 | zf-CCCH | 30.9 | 4.7e-10 | 212 | 236 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C +f++ G C +G++C+FaHg PHU30451.1 212 FKTKMCANFSK-GLCTFGEKCHFAHG 236 69*********.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MSLFYSKDCS PDLIGHADVG YLSDPHKARS QIGYVFICGS TVISWRYTKQ SIVATSSNHA 60 EIIAIHERKN EPGNFIYLVQ IKFLVYFLFL ISRNQKAVDL CTSGCSYGEG CHFLHYVPGY 120 TAMSQLSNMG SNPAPPFGRN GASFSDGPAP TVKSKFCSRF NTAEGCRFGD KCHFAHSEME 180 VGKQVRPGYN DFQAKGPLSG FSPMVRGPGG PFKTKMCANF SKGLCTFGEK CHFAHGLNEL 240 QKPLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-14 | C3H family protein |