PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30450.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 688aa MW: 76829.7 Da PI: 9.957

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	2.1e-10	19	70	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W+t+E++ll+ avk++G ++W+++a +++ +t+ ck+++++++ PHU30450.1 19 TWSTWEELLLAFAVKRHGLKNWESVAMELQsrislpVLLTAQICKDKYHDLR 70 7*********************************89********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MENDSAAVAT TTTKKTTTTW STWEELLLAF AVKRHGLKNW ESVAMELQSR ISLPVLLTAQ 60 ICKDKYHDLR RRFMNSYNNN SYDEKINDSF DEGVELDVDG NGDVTIPWIE ELRQLRVAEL 120 KKEVQRYDLS IQSLQLKVKT MEEERERSLK EKSLDDGKRP DLEDVKEERS QNDKNSGADV 180 KPEDSTGKAV SSEESDRENR SFNESNSTEN RETGVKNEPE PVEIGEDKPV QEVKPVSEAD 240 SYNDSSSDRQ EKKVRRDSGD LRDTVSESKE ETKENSDVQS TATLTKRKRQ CSGGDGGRNG 300 GDAAEMASPA VGIKGEVTAK SEPLIEFLDI IRSHKRGSMF KRRLDSQKAD KYKSIIRQHM 360 DLETVQARID DGSYCSCPAK FYLDLLLVFN NAIVYFPKSS SESTAANELR SIVIEELKKT 420 RTQSKDQSPG PRLAPLKIQL KPELEISDSL LAKHKSTVPI VVCRKRSSIS AKAAGSGNNK 480 PEKHGDSKPP LNPKPPIKSS SNEEESSIKL GMKEKPVTGA RSMRRSSKGR SNNNASPSNN 540 NNNQNTNPKQ TNSGGDKKED AKPEKKKEES KKRGAAADFL KRIKKTSPTK GTLIEALKND 600 PTEDVVSVKV SNKKEQQKKK VDDRREVPVR RSGGGGGSAI KEEGSPSKRS VGRPPKRGGR 660 EVVVQEKRGR ENSEKDDSSK RPKKRSRR

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MENDSAAVAT TTTKKTTTTW STWEELLLAF AVKRHGLKNW ESVAMELQSR ISLPVLLTAQ  60
ICKDKYHDLR RRFMNSYNNN SYDEKINDSF DEGVELDVDG NGDVTIPWIE ELRQLRVAEL  120
KKEVQRYDLS IQSLQLKVKT MEEERERSLK EKSLDDGKRP DLEDVKEERS QNDKNSGADV  180
KPEDSTGKAV SSEESDRENR SFNESNSTEN RETGVKNEPE PVEIGEDKPV QEVKPVSEAD  240
SYNDSSSDRQ EKKVRRDSGD LRDTVSESKE ETKENSDVQS TATLTKRKRQ CSGGDGGRNG  300
GDAAEMASPA VGIKGEVTAK SEPLIEFLDI IRSHKRGSMF KRRLDSQKAD KYKSIIRQHM  360
DLETVQARID DGSYCSCPAK FYLDLLLVFN NAIVYFPKSS SESTAANELR SIVIEELKKT  420
RTQSKDQSPG PRLAPLKIQL KPELEISDSL LAKHKSTVPI VVCRKRSSIS AKAAGSGNNK  480
PEKHGDSKPP LNPKPPIKSS SNEEESSIKL GMKEKPVTGA RSMRRSSKGR SNNNASPSNN  540
NNNQNTNPKQ TNSGGDKKED AKPEKKKEES KKRGAAADFL KRIKKTSPTK GTLIEALKND  600
PTEDVVSVKV SNKKEQQKKK VDDRREVPVR RSGGGGGSAI KEEGSPSKRS VGRPPKRGGR  660
EVVVQEKRGR ENSEKDDSSK RPKKRSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	680	688	KRPKKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	8e-88	MYB_related family protein